D-Index & Metrics Best Publications
Microbiology
USA
2023

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Microbiology D-index 112 Citations 48,134 489 World Ranking 112 National Ranking 62
Medicine D-index 109 Citations 45,611 449 World Ranking 3379 National Ranking 1922
Genetics D-index 100 Citations 30,829 396 World Ranking 483 National Ranking 248

Research.com Recognitions

Awards & Achievements

2023 - Research.com Microbiology in United States Leader Award

2015 - Fellow of the American Association for the Advancement of Science (AAAS)

2002 - Betty Klepper Endowed Lectureship, American Society of Agronomy

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • Genetics
  • DNA

His primary scientific interests are in Genetics, Phylogenetics, Phylogenetic tree, Microbiology and Bacillus anthracis. His Genetics research focuses on Genetic marker, Genotype, Genome, Variable number tandem repeat and Locus. His Phylogenetics research incorporates themes from Francisella tularensis, Virulence, Subspecies and Population genetics.

His Phylogenetic tree research includes elements of Evolutionary biology, Disease reservoir, Genetic diversity and Bacterial genome size. His work deals with themes such as Microbiome, Plasmid, Anaerobic bacteria and Staphylococcus aureus, which intersect with Microbiology. His Bacillus anthracis research focuses on subjects like Bacillus cereus, which are linked to Amplified Fragment Length Polymorphism Analysis and Bacilli.

His most cited work include:

  • Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (2043 citations)
  • Multiple-Locus Variable-Number Tandem Repeat Analysis Reveals Genetic Relationships within Bacillus anthracis (655 citations)
  • Staphylococcus aureus CC398: Host Adaptation and Emergence of Methicillin Resistance in Livestock (588 citations)

What are the main themes of his work throughout his whole career to date?

Paul Keim mainly focuses on Genetics, Microbiology, Genome, Bacillus anthracis and Burkholderia pseudomallei. Whole genome sequencing, Phylogenetics, Genotyping, Genotype and Phylogenetic tree are the primary areas of interest in his Genetics study. He has included themes like Evolutionary biology, Francisella tularensis and Typing in his Phylogenetics study.

His Microbiology research is multidisciplinary, incorporating elements of Virology, Bacteria, Multilocus sequence typing, Polymerase chain reaction and Virulence. His Genome study combines topics in areas such as Yersinia pestis and DNA sequencing. He usually deals with Bacillus anthracis and limits it to topics linked to Gene and Molecular biology.

He most often published in these fields:

  • Genetics (59.65%)
  • Microbiology (35.82%)
  • Genome (26.75%)

What were the highlights of his more recent work (between 2015-2021)?

  • Microbiology (35.82%)
  • Genetics (59.65%)
  • Genome (26.75%)

In recent papers he was focusing on the following fields of study:

The scientist’s investigation covers issues in Microbiology, Genetics, Genome, Burkholderia pseudomallei and Melioidosis. Antibiotic resistance is closely connected to Multilocus sequence typing in his research, which is encompassed under the umbrella topic of Microbiology. His research in the fields of Genomics overlaps with other disciplines such as Context.

His work in the fields of Burkholderia pseudomallei, such as Burkholderia thailandensis, overlaps with other areas such as Binge drinking. His biological study spans a wide range of topics, including Phylogenetic tree, Antigen, Burkholderia cepacia complex, Burkholderia and Antibody. His study looks at the relationship between Comparative genomics and topics such as Phylogenetics, which overlap with Plague and Yersinia pestis.

Between 2015 and 2021, his most popular works were:

  • Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (2043 citations)
  • QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science (385 citations)
  • NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats. (114 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • DNA
  • Bacteria

His primary areas of investigation include Microbiology, Multilocus sequence typing, Genetics, Ecology and Burkholderia pseudomallei. His Microbiology study integrates concerns from other disciplines, such as Bacillus cereus, Bacteria, Genotype, Sequence analysis and Polymerase chain reaction. His studies in Multilocus sequence typing integrate themes in fields like 16S ribosomal RNA, Cereus, Phylogenetics, Antibiotic resistance and Typing.

His study in Genetics focuses on Genome and Reference genome. His studies deal with areas such as Phylogeography, Biological dispersal and Far East as well as Ecology. Paul Keim has included themes like Pathogen and Melioidosis in his Burkholderia pseudomallei study.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich.
Nature Biotechnology (2019)

6388 Citations

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich.
Nature Biotechnology (2019)

3419 Citations

Multiple-Locus Variable-Number Tandem Repeat Analysis Reveals Genetic Relationships within Bacillus anthracis

P. Keim;L. B. Price;A. M. Klevytska;K. L. Smith;K. L. Smith.
Journal of Bacteriology (2000)

967 Citations

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich.
PeerJ (2018)

760 Citations

Staphylococcus aureus CC398: Host Adaptation and Emergence of Methicillin Resistance in Livestock

Lance B. Price;Marc Stegger;Henrik Hasman;Maliha Aziz.
Mbio (2012)

737 Citations

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

Giovanna Morelli;Yajun Song;Yajun Song;Camila J Mazzoni;Mark Eppinger.
Nature Genetics (2010)

638 Citations

Microevolution and history of the plague bacillus, Yersinia pestis

Mark Achtman;Giovanna Morelli;Peixuan Zhu;Thierry Wirth.
Proceedings of the National Academy of Sciences of the United States of America (2004)

623 Citations

RFLP Mapping in Soybean: Association between Marker Loci and Variation in Quantitative Traits

P. Keim;Brian W Diers;T. C. Olson;R. C. Shoemaker.
Genetics (1990)

558 Citations

Comparative Genome Sequencing for Discovery of Novel Polymorphisms in Bacillus anthracis

Timothy D. Read;Steven L. Salzberg;Mihai Pop;Martin Shumway.
Science (2002)

521 Citations

Sequence and Organization of pXO1, the Large Bacillus anthracis Plasmid Harboring the Anthrax Toxin Genes

RT Okinaka;K Cloud;O Hampton;AR Hoffmaster.
Journal of Bacteriology (1999)

503 Citations

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