World's Best Scientists 2026 revealed!
Award Badge
Microbiology
USA
2026

D-Index & Metrics

Microbiology

D-Index
122
Citations
72534
World Ranking
129
National Ranking
65

Genetics

D-Index
118
Citations
59587
World Ranking
407
National Ranking
210

Medicine

D-Index
121
Citations
71386
World Ranking
3552
National Ranking
1957

Research.com Recognitions

  • 2026 - Research.com Microbiology in United States Leader Award
  • 2025 - Research.com Microbiology in United States Leader Award
  • 2015 - Fellow of the American Association for the Advancement of Science (AAAS)
  • 2002 - Betty Klepper Endowed Lectureship, American Society of Agronomy

Overview

Paul Keim is affiliated with Northern Arizona University in the United States and conducts research primarily in the fields of Medicine and Biochemistry, Genetics and Molecular Biology. Their work spans multiple subfields including Infectious Diseases, Epidemiology, Molecular Biology, Plant Science, and Ecology. The scientist's research covers a range of topics such as Burkholderia infections and melioidosis, SARS-CoV-2 and COVID-19 research, fungal infections and studies, COVID-19 clinical research studies, bacteriophages and microbial interactions, gut microbiota and health, and genomics and phylogenetic studies.

Frequent publication venues for this researcher include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • PLoS neglected tropical diseases
  • Nature Communications
  • mBio
  • Antimicrobial Agents and Chemotherapy

Some of the recent scientific papers where Paul Keim has contributed include:

  • The K18-Human ACE2 Transgenic Mouse Model Recapitulates Non-severe and Severe COVID-19 in Response to an Infectious Dose of the SARS-CoV-2 Virus, 2021, Journal of Virology
  • The K18-Human ACE2 Transgenic Mouse Model Recapitulates Non-severe and Severe COVID-19 in Response to an Infectious Dose of the SARS-CoV-2 Virus., 2022, PubMed
  • Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance, 2020, Nature Communications
  • Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics, 2020, Nature Microbiology
  • Off-the-shelf CAR natural killer cells secreting IL-15 target spike in treating COVID-19, 2022, Nature Communications

The scientist collaborates frequently with several researchers including:

  • Jason W. Sahl
  • Erik W. Settles
  • Bridget M. Barker
  • David M. Wagner
  • Heather Mead

Among the awards received, Paul Keim has been recognized as a Fellow of the American Association for the Advancement of Science (AAAS) in 2015 and was awarded the Betty Klepper Endowed Lectureship by the American Society of Agronomy in 2002.

Best Publications

  • Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

    Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  • Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

    Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  • Multiple-Locus Variable-Number Tandem Repeat Analysis Reveals Genetic Relationships within Bacillus anthracis

    P. Keim;L. B. Price;A. M. Klevytska;K. L. Smith;K. L. Smith

  • QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

    Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich

  • Staphylococcus aureus CC398: Host Adaptation and Emergence of Methicillin Resistance in Livestock

    Lance B. Price;Marc Stegger;Henrik Hasman;Maliha Aziz

  • Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

    Giovanna Morelli;Yajun Song;Yajun Song;Camila J Mazzoni;Mark Eppinger

  • Microevolution and history of the plague bacillus, Yersinia pestis

    Mark Achtman;Giovanna Morelli;Peixuan Zhu;Thierry Wirth

  • RFLP Mapping in Soybean: Association between Marker Loci and Variation in Quantitative Traits

    P. Keim;Brian W Diers;T. C. Olson;R. C. Shoemaker

  • Yersinia pestis and the Plague of Justinian 541-543 AD: a genomic analysis

    David M. Wagner;Jennifer Klunk;Michaela Harbeck;Alison Devault

  • Hybrid populations selectively filter gene introgression between species.

    Gregory D. Martinsen;Thomas G. Whitham;Richard J. Turek;Paul Keim

  • Sequence and Organization of pXO1, the Large Bacillus anthracis Plasmid Harboring the Anthrax Toxin Genes

    RT Okinaka;K Cloud;O Hampton;AR Hoffmaster

  • Comparative Genome Sequencing for Discovery of Novel Polymorphisms in Bacillus anthracis

    Timothy D. Read;Steven L. Salzberg;Mihai Pop;Martin Shumway

  • The Epidemic of Extended-Spectrum-β-Lactamase-Producing Escherichia coli ST131 Is Driven by a Single Highly Pathogenic Subclone, H30-Rx

    Lance B. Price;Lance B. Price;James R. Johnson;Maliha Aziz;Maliha Aziz;Connie Clabots

  • Global Genetic Population Structure of Bacillus anthracis

    Matthew N. Van Ert;W Ryan Easterday;Lynn Y Huynh;Richard T. Okinaka;Richard T. Okinaka

  • Molecular epidemiology, evolution, and ecology of Francisella.

    Paul Keim;Anders Johansson;David M. Wagner

  • RFLP analysis of soybean seed protein and oil content

    B. W. Diers;P. Keim;W. R. Fehr;R. C. Shoemaker;R. C. Shoemaker

  • Molecular evolution and diversity in Bacillus anthracis as detected by amplified fragment length polymorphism markers

    Paul Keim;Abdulahi Kalif;James Schupp;Karen Hill

  • A Detailed Linkage Map of Rainbow Trout Produced Using Doubled Haploids

    William P. Young;Paul A. Wheeler;Virginia H. Coryell;Paul Keim

  • A rapid protocol for isolating soybean DNA

    P. Keim;T.C. Olson;R.C. Shoemaker

  • Multidrug-Resistant Staphylococcus aureus in US Meat and Poultry

    Andrew E. Waters;Tania Contente-Cuomo;Jordan Buchhagen;Cindy M. Liu;Cindy M. Liu

  • Erratum: Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis (Journal of Bacteriology (2000) 182:10 (2928-2936))

    P. Keim;L. B. Price;A. M. Klevytska;K. L. Smith

Frequent Co-Authors

David M. Wagner
David M. Wagner Northern Arizona University
Talima Pearson
Talima Pearson Northern Arizona University
David M. Engelthaler
David M. Engelthaler Translational Genomics Research Institute
Lance B. Price
Lance B. Price George Washington University
Bart J. Currie
Bart J. Currie Charles Darwin University
Jeffrey T. Foster
Jeffrey T. Foster Northern Arizona University
Mark Mayo
Mark Mayo Charles Darwin University
Jacques Ravel
Jacques Ravel University of Maryland, Baltimore
Sharon J. Peacock
Sharon J. Peacock University of Cambridge
Thomas G. Whitham
Thomas G. Whitham Northern Arizona University

If you think any of the details on this page are incorrect, let us know.

Report an issue

We appreciate your kind effort to assist us to improve this page, it would be helpful providing us with as much detail as possible in the text box below:

Related Online Degrees & Career Pathways

Exploring microbiology in the USA opens doors to a variety of related online degrees that can shape diverse career paths. For individuals facing unique challenges, such as those wondering what can a felon go to college for, many accredited programs provide accessible options. These programs offer pathways into health sciences and allied fields, allowing students to build a meaningful career regardless of past difficulties.

One promising avenue is transitioning into healthcare roles like becoming a functional medicine nurse salary aligned positions. Functional medicine nursing integrates holistic approaches with traditional medicine, a growing field offering competitive remuneration and rewarding patient interaction.

Alternatively, careers in health information management are in high demand. Understanding health information manager salary trends can help prospective students evaluate the financial benefits of entering this specialty where information accuracy and security are paramount.

For those interested in the intersection of healthcare and administration, becoming a certified professional coder is a valuable option. Exploring the certified professional coder salary and career paths offers insight into stable job prospects that support the medical industry through precise coding and billing processes.

Best Scientists Citing Paul Keim

Trending Scientists

Recently Published Articles