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D-Index & Metrics

Genetics

D-Index
85
Citations
128997
World Ranking
1269
National Ranking
603

Research.com Recognitions

  • 2006 - Fellow of Alfred P. Sloan Foundation

Overview

Joshua M. Stuart is affiliated with the University of California, Santa Cruz in the United States. Their research primarily spans the fields of Biochemistry, Genetics, and Molecular Biology, with a substantial focus on Medicine. Within these broad categories, their work delves into specific subfields, including Molecular Biology, Cancer Research, Pulmonary and Respiratory Medicine, Oncology, and Immunology.

The scientist's research encompasses several main topics, notably Cancer Genomics and Diagnostics, Single-cell and spatial transcriptomics, Prostate Cancer Treatment and Research, Gene Regulatory Network Analysis, Bioinformatics and Genomic Networks, RNA modifications and cancer, and Gene expression and cancer classification.

Joshua M. Stuart has published numerous papers in various scientific venues. Some of the recent publications include:

  • Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (2020), published in Nature
  • Comprehensive Analysis of Genetic Ancestry and Its Molecular Correlates in Cancer (2020), published in Cancer Cell
  • Transcriptional profiling identifies an androgen receptor activity-low, stemness program associated with enzalutamide resistance (2020), published in Proceedings of the National Academy of Sciences
  • Modeling Human TBX5 Haploinsufficiency Predicts Regulatory Networks for Congenital Heart Disease (2020), published in Developmental Cell
  • VEGA is an interpretable generative model for inferring biological network activity in single-cell transcriptomics (2021), published in Nature Communications

Frequent co-authors of Joshua M. Stuart include Christopher K. Wong, Ina Felau, Peter W. Laird, Katherine A. Hoadley, and Andrew D. Cherniack, indicating collaborative efforts in their research programs.

Their work is commonly published in venues such as bioRxiv (Cold Spring Harbor Laboratory), UNC Libraries, Nature Communications, Journal of Clinical Oncology, and Cancer Research.

Joshua M. Stuart was recognized as a Fellow of the Alfred P. Sloan Foundation in 2006.

Best Publications

  • Comprehensive molecular portraits of human breast tumours

    Daniel C. Koboldt;Robert S. Fulton;Michael D. McLellan;Heather Schmidt

  • The cancer genome atlas pan-cancer analysis project

    John N Weinstein;John N Weinstein;Eric A. Collisson;Gordon B Mills;Kenna R Mills Shaw;Kenna R Mills Shaw

  • Comprehensive molecular characterization of human colon and rectal cancer

    Donna M. Muzny;Matthew N. Bainbridge;Kyle Chang;Huyen H. Dinh

  • Integrated genomic analyses of ovarian carcinoma

    D. Bell;A. Berchuck;M. Birrer;J. Chien

  • Integrated genomic characterization of endometrial carcinoma

    Gad Getz;Stacey B. Gabriel;Kristian Cibulskis;Eric Lander

  • Comprehensive molecular profiling of lung adenocarcinoma: The cancer genome atlas research network

    Eric A. Collisson;Joshua D. Campbell;Angela N. Brooks;Angela N. Brooks;Alice H. Berger

  • Comprehensive genomic characterization of head and neck squamous cell carcinomas

    Michael S. Lawrence;Carrie Sougnez;Lee Lichtenstein;Kristian Cibulskis

  • The Immune Landscape of Cancer

    Vésteinn Thorsson;David L Gibbs;Scott D Brown;Denise Wolf

  • Comprehensivemolecular characterization of clear cell renal cell carcinoma

    Chad J. Creighton;Margaret Morgan;Preethi H. Gunaratne;Preethi H. Gunaratne;David A. Wheeler

  • Comprehensive genomic characterization of squamous cell lung cancers

    Peter S. Hammerman;Doug Voet;Michael S. Lawrence;Douglas Voet

  • Comprehensive molecular characterization of urothelial bladder carcinoma

    John N Weinstein;Rehan Akbani;Bradley McIntosh Broom;Wenyi Wang

  • Oncogenic Signaling Pathways in The Cancer Genome Atlas

    Francisco Sanchez-Vega;Marco Mina;Joshua Armenia;Walid K. Chatila

  • Pan-cancer analysis of whole genomes

    Peter J. Campbell;Gad Getz;Jan O. Korbel;Joshua M. Stuart

  • Genomic Classification of Cutaneous Melanoma

    Rehan Akbani;Kadir C. Akdemir;B. Arman Aksoy;Monique Albert

  • The Molecular Taxonomy of Primary Prostate Cancer

    Adam Abeshouse;Jaeil Ahn;Rehan Akbani;Adrian Ally

  • Integrated Genomic Characterization of Papillary Thyroid Carcinoma

    Nishant Agrawal;Rehan Akbani;B. Arman Aksoy;Adrian Ally

  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules

    Joshua M. Stuart;Eran Segal;Daphne Koller;Stuart K. Kim

  • International network of cancer genome projects

    Thomas J. Hudson;Thomas J. Hudson;Warwick Anderson;Axel Aretz;Anna D. Barker

  • The Cancer Genome Atlas Pan-Cancer analysis project

    Kyle Chang;Chad J Creighton;Caleb Davis;Lawrence Donehower

  • Integrated genomic analyses of ovarian carcinoma

    D. Bell;A. Berchuck;M. Birrer;J. Chien

Frequent Co-Authors

David Haussler
David Haussler University of California, Santa Cruz
Gad Getz
Gad Getz Broad Institute
Andrew D. Cherniack
Andrew D. Cherniack Broad Institute
Peter W. Laird
Peter W. Laird Van Andel Institute
John N. Weinstein
John N. Weinstein The University of Texas MD Anderson Cancer Center
Gordon B. Mills
Gordon B. Mills Oregon Health & Science University
Michael S. Lawrence
Michael S. Lawrence Harvard University
Andrew J. Mungall
Andrew J. Mungall BC Cancer Agency
Matthew Meyerson
Matthew Meyerson Harvard University
Rameen Beroukhim
Rameen Beroukhim Harvard University

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