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John D. Chodera

D-Index & Metrics

Discipline name D-Index World Ranking Current World Ranking National Ranking Current National Ranking Publications Citations
Chemistry 69 6073 5512 1848 1536 188 26429

John D. Chodera publications per year

The chart shows the history of publications by John D. Chodera between 1973 and 2026, highlighting the no. of papers published in each year and offering an overview of the publication velocity of this scholar. John D. Chodera published across 54 years, from 1973 to 2026, averaging 4.8 papers a year. Output peaked at 26 publications in 2021. 19 of the 261 publications appeared in the last two years.

No. of publications
5 10 15 20 25
Bar chart. Horizontal axis: year, 1973 to 2026. Vertical axis: number of publications, 0 to 26. Peak 26 publications in 2021. 1973: 1 publication 1974: 0 publications 1975: 0 publications 1976: 0 publications 1977: 0 publications 1978: 0 publications 1979: 1 publication 1980: 1 publication 1981: 0 publications 1982: 0 publications 1983: 0 publications 1984: 0 publications 1985: 0 publications 1986: 0 publications 1987: 0 publications 1988: 0 publications 1989: 0 publications 1990: 0 publications 1991: 0 publications 1992: 0 publications 1993: 0 publications 1994: 0 publications 1995: 0 publications 1996: 0 publications 1997: 0 publications 1998: 0 publications 1999: 0 publications 2000: 0 publications 2001: 1 publication 2002: 0 publications 2003: 1 publication 2004: 0 publications 2005: 0 publications 2006: 2 publications 2007: 9 publications 2008: 3 publications 2009: 2 publications 2010: 3 publications 2011: 15 publications 2012: 8 publications 2013: 7 publications 2014: 8 publications 2015: 10 publications 2016: 14 publications 2017: 11 publications 2018: 19 publications 2019: 18 publications 2020: 21 publications 2021: 26 publications 2022: 21 publications 2023: 26 publications 2024: 14 publications 2025: 18 publications 2026: 1 publication
1973 2026

261 publications in total across all disciplines

View publications per year as a table
John D. Chodera: publications per year, 1973 to 2026
Year Publications
1973 1
1974 0
1975 0
1976 0
1977 0
1978 0
1979 1
1980 1
1981 0
1982 0
1983 0
1984 0
1985 0
1986 0
1987 0
1988 0
1989 0
1990 0
1991 0
1992 0
1993 0
1994 0
1995 0
1996 0
1997 0
1998 0
1999 0
2000 0
2001 1
2002 0
2003 1
2004 0
2005 0
2006 2
2007 9
2008 3
2009 2
2010 3
2011 15
2012 8
2013 7
2014 8
2015 10
2016 14
2017 11
2018 19
2019 18
2020 21
2021 26
2022 21
2023 26
2024 14
2025 18
2026 1
Total 261
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John D. Chodera publication distribution in Chemistry in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Chemistry in 2026. The highlighted bar marks where John D. Chodera sits on this spectrum.

No. of scientists
250 500 750 1,000 1,250
Bar chart with 63 bars. Horizontal axis: publications, 61–80 to 1,295+. Vertical axis: number of scientists, 0 to 1,350. Most scientists, 1,350, have 161–180 publications. The last bar groups every scientist with 1,295 publications or more. The highlighted bar, 181–200 publications, is where this scientist sits. 61–80 publications: 66 scientists 81–100 publications: 302 scientists 101–120 publications: 623 scientists 121–140 publications: 918 scientists 141–160 publications: 1,218 scientists 161–180 publications: 1,350 scientists 181–200 publications: 1,344 scientists 201–220 publications: 1,281 scientists 221–240 publications: 1,216 scientists 241–260 publications: 1,100 scientists 261–280 publications: 979 scientists 281–300 publications: 939 scientists 301–320 publications: 764 scientists 321–340 publications: 643 scientists 341–360 publications: 628 scientists 361–380 publications: 522 scientists 381–400 publications: 459 scientists 401–420 publications: 397 scientists 421–440 publications: 327 scientists 441–460 publications: 270 scientists 461–480 publications: 265 scientists 481–500 publications: 252 scientists 501–520 publications: 201 scientists 521–540 publications: 185 scientists 541–560 publications: 148 scientists 561–580 publications: 148 scientists 581–600 publications: 132 scientists 601–620 publications: 114 scientists 621–640 publications: 104 scientists 641–660 publications: 91 scientists 661–680 publications: 92 scientists 681–700 publications: 73 scientists 701–720 publications: 57 scientists 721–740 publications: 54 scientists 741–760 publications: 67 scientists 761–780 publications: 45 scientists 781–800 publications: 46 scientists 801–820 publications: 39 scientists 821–840 publications: 32 scientists 841–860 publications: 36 scientists 861–880 publications: 29 scientists 881–900 publications: 26 scientists 901–920 publications: 24 scientists 921–940 publications: 14 scientists 941–960 publications: 23 scientists 961–980 publications: 28 scientists 981–1,000 publications: 15 scientists 1,001–1,020 publications: 29 scientists 1,021–1,040 publications: 12 scientists 1,041–1,060 publications: 19 scientists 1,061–1,080 publications: 12 scientists 1,081–1,100 publications: 6 scientists 1,101–1,120 publications: 8 scientists 1,121–1,140 publications: 12 scientists 1,141–1,160 publications: 5 scientists 1,161–1,180 publications: 6 scientists 1,181–1,200 publications: 14 scientists 1,201–1,220 publications: 7 scientists 1,221–1,240 publications: 2 scientists 1,241–1,260 publications: 6 scientists 1,261–1,280 publications: 4 scientists 1,281–1,294 publications: 6 scientists 1,295+ publications: 100 scientists
61–80 publications 1,295+

This scientist: 188 publications — 28th percentile

28% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 1,295 publications or more.

View publications distribution as a table
Number of Chemistry scientists by publication count, Research.com 2026 ranking edition. Based on 17,934 ranked scientists.
Publications Scientists This scientist
61–80 66
81–100 302
101–120 623
121–140 918
141–160 1,218
161–180 1,350
181–200 1,344 188
201–220 1,281
221–240 1,216
241–260 1,100
261–280 979
281–300 939
301–320 764
321–340 643
341–360 628
361–380 522
381–400 459
401–420 397
421–440 327
441–460 270
461–480 265
481–500 252
501–520 201
521–540 185
541–560 148
561–580 148
581–600 132
601–620 114
621–640 104
641–660 91
661–680 92
681–700 73
701–720 57
721–740 54
741–760 67
761–780 45
781–800 46
801–820 39
821–840 32
841–860 36
861–880 29
881–900 26
901–920 24
921–940 14
941–960 23
961–980 28
981–1,000 15
1,001–1,020 29
1,021–1,040 12
1,041–1,060 19
1,061–1,080 12
1,081–1,100 6
1,101–1,120 8
1,121–1,140 12
1,141–1,160 5
1,161–1,180 6
1,181–1,200 14
1,201–1,220 7
1,221–1,240 2
1,241–1,260 6
1,261–1,280 4
1,281–1,294 6
1,295+ 100
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John D. Chodera D-index placement in Chemistry in 2026

The chart shows the D-index (discipline H-index) distribution of Chemistry scientists ranked by Research.com in 2026. The highlighted bar marks where John D. Chodera sits on this spectrum.

No. of scientists
250 500 750 1,000
Bar chart with 61 bars. Horizontal axis: D-Index, 40–41 to 159+. Vertical axis: number of scientists, 0 to 1,051. Most scientists, 1,051, have 56–57 D-Index. The last bar groups every scientist with 159 D-Index or more. The highlighted bar, 68–69 D-Index, is where this scientist sits. 40–41 D-Index: 289 scientists 42–43 D-Index: 612 scientists 44–45 D-Index: 808 scientists 46–47 D-Index: 776 scientists 48–49 D-Index: 835 scientists 50–51 D-Index: 861 scientists 52–53 D-Index: 872 scientists 54–55 D-Index: 933 scientists 56–57 D-Index: 1,051 scientists 58–59 D-Index: 930 scientists 60–61 D-Index: 882 scientists 62–63 D-Index: 834 scientists 64–65 D-Index: 731 scientists 66–67 D-Index: 775 scientists 68–69 D-Index: 683 scientists 70–71 D-Index: 646 scientists 72–73 D-Index: 561 scientists 74–75 D-Index: 501 scientists 76–77 D-Index: 437 scientists 78–79 D-Index: 388 scientists 80–81 D-Index: 354 scientists 82–83 D-Index: 292 scientists 84–85 D-Index: 275 scientists 86–87 D-Index: 254 scientists 88–89 D-Index: 235 scientists 90–91 D-Index: 185 scientists 92–93 D-Index: 192 scientists 94–95 D-Index: 155 scientists 96–97 D-Index: 163 scientists 98–99 D-Index: 125 scientists 100–101 D-Index: 105 scientists 102–103 D-Index: 105 scientists 104–105 D-Index: 112 scientists 106–107 D-Index: 88 scientists 108–109 D-Index: 68 scientists 110–111 D-Index: 69 scientists 112–113 D-Index: 65 scientists 114–115 D-Index: 79 scientists 116–117 D-Index: 61 scientists 118–119 D-Index: 44 scientists 120–121 D-Index: 37 scientists 122–123 D-Index: 40 scientists 124–125 D-Index: 33 scientists 126–127 D-Index: 26 scientists 128–129 D-Index: 34 scientists 130–131 D-Index: 35 scientists 132–133 D-Index: 25 scientists 134–135 D-Index: 27 scientists 136–137 D-Index: 17 scientists 138–139 D-Index: 16 scientists 140–141 D-Index: 20 scientists 142–143 D-Index: 20 scientists 144–145 D-Index: 15 scientists 146–147 D-Index: 9 scientists 148–149 D-Index: 9 scientists 150–151 D-Index: 16 scientists 152–153 D-Index: 11 scientists 154–155 D-Index: 9 scientists 156–157 D-Index: 3 scientists 158 D-Index: 3 scientists 159+ D-Index: 98 scientists
40–41 D-Index 159+

This scientist: 69 D-Index — 66th percentile

66% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 159 D-Index or more.

View D-Index distribution as a table
Number of Chemistry scientists by D-index, Research.com 2026 ranking edition. Based on 17,934 ranked scientists.
D-Index Scientists This scientist
40–41 289
42–43 612
44–45 808
46–47 776
48–49 835
50–51 861
52–53 872
54–55 933
56–57 1,051
58–59 930
60–61 882
62–63 834
64–65 731
66–67 775
68–69 683 69
70–71 646
72–73 561
74–75 501
76–77 437
78–79 388
80–81 354
82–83 292
84–85 275
86–87 254
88–89 235
90–91 185
92–93 192
94–95 155
96–97 163
98–99 125
100–101 105
102–103 105
104–105 112
106–107 88
108–109 68
110–111 69
112–113 65
114–115 79
116–117 61
118–119 44
120–121 37
122–123 40
124–125 33
126–127 26
128–129 34
130–131 35
132–133 25
134–135 27
136–137 17
138–139 16
140–141 20
142–143 20
144–145 15
146–147 9
148–149 9
150–151 16
152–153 11
154–155 9
156–157 3
158 3
159+ 98
Download as CSV

Overview

John D. Chodera is associated with Memorial Sloan Kettering Cancer Center in the United States. Their research primarily focuses on Biochemistry, Genetics, and Molecular Biology, with extensive work in Molecular Biology and Computational Theory and Mathematics. They also contribute to Materials Chemistry, Infectious Diseases, and Organic Chemistry.

The scientist's research covers key topics including:

  • Protein Structure and Dynamics
  • Computational Drug Discovery Methods
  • Machine Learning in Materials Science
  • SARS-CoV-2 and COVID-19 Research
  • Vaccines and Immunoinformatics Approaches
  • Enzyme Structure and Function
  • Mass Spectrometry Techniques and Applications

John D. Chodera has authored papers such as:

  • Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity, 2021, Cell
  • SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape, 2021, Nature
  • SARS-CoV-2 simulations go exascale to predict dramatic spike opening and cryptic pockets across the proteome, 2021, Nature Chemistry
  • OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentials, 2023, The Journal of Physical Chemistry B
  • Machine learning force fields and coarse-grained variables in molecular dynamics: application to materials and biological systems, 2020, arXiv (Cornell University)

Their frequent co-authors include:

  • David L. Mobley
  • Pavan Kumar Behara
  • Michael R. Shirts
  • David Dotson
  • Sukrit Singh

Key venues for their publications are:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Zenodo (CERN European Organization for Nuclear Research)
  • arXiv (Cornell University)
  • Journal of Chemical Theory and Computation
  • Biophysical Journal

Best Publications

  • OpenMM 7: Rapid development of high performance algorithms for molecular dynamics.

    Peter Eastman;Jason Swails;John D. Chodera;Robert T. McGibbon

  • Statistically optimal analysis of samples from multiple equilibrium states

    Michael R. Shirts;John D. Chodera

  • Current Status of the AMOEBA Polarizable Force Field

    Jay W. Ponder;Chuanjie Wu;Pengyu Ren;Vijay S. Pande

  • Markov models of molecular kinetics: Generation and validation

    Jan-Hendrik Prinz;Hao Wu;Marco Sarich;Bettina Keller

  • Markov state models of biomolecular conformational dynamics

    John D Chodera;Frank Noé

  • OpenMM 4: A reusable, extensible, hardware independent library for high performance molecular simulation

    Peter Eastman;Mark S. Friedrichs;John D. Chodera;Randall J. Radmer

  • Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics.

    John D. Chodera;Nina Singhal;Vijay S. Pande;Ken A. Dill

  • Alchemical free energy methods for drug discovery: progress and challenges

    John D Chodera;David L Mobley;Michael R Shirts;Richard W Dixon

  • Entropy-Enthalpy Compensation: Role and Ramifications in Biomolecular Ligand Recognition and Design

    John D. Chodera;David L. Mobley

  • Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity.

    Emma C. Thomson;Emma C. Thomson;Laura E. Rosen;James G. Shepherd;Roberto Spreafico

  • Use of the Weighted Histogram Analysis Method for the Analysis of Simulated and Parallel Tempering Simulations.

    John D. Chodera;William C. Swope;Jed W. Pitera;Chaok Seok

  • Hypoxia Induces Production of L-2-Hydroxyglutarate

    Andrew M. Intlekofer;Raymond G. Dematteo;Sriram Venneti;Lydia W.S. Finley

  • Ensemble Docking in Drug Discovery.

    Rommie E. Amaro;Jerome Baudry;John Chodera;Özlem Demir

  • Systematic improvement of a classical molecular model of water.

    Lee Ping Wang;Teresa Head-Gordon;Jay W. Ponder;Pengyu Ren

  • Predicting absolute ligand binding free energies to a simple model site

    David L. Mobley;Alan P. Graves;John D. Chodera;Andrea C. McReynolds

  • OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentials

    Unknown

  • On the use of orientational restraints and symmetry corrections in alchemical free energy calculations

    David L. Mobley;John D. Chodera;Ken A. Dill

  • The protein folding problem: when will it be solved?

    Ken A Dill;S Banu Ozkan;Thomas R Weikl;John D Chodera

  • The Ribosome Modulates Nascent Protein Folding

    Christian M. Kaiser;Daniel H. Goldman;John D. Chodera;Ignacio Tinoco

  • Predicting small-molecule solvation free energies: an informal blind test for computational chemistry.

    Anthony Nicholls;David L. Mobley;J. Peter Guthrie;John D. Chodera

  • Comparison of Charge Models for Fixed-Charge Force Fields: Small Molecule Hydration Free Energies in Explicit Solvent

    David L Mobley;Elise Dumont;John D Chodera;Ken A Dill

  • Compensation: Role and Ramifications in Biomolecular Ligand Recognition and Design

    John D. Chodera;David L. Mobley

Frequent Co-Authors

Vijay S. Pande
Vijay S. Pande Stanford University
Ken A. Dill
Ken A. Dill Stony Brook University
Michael K. Gilson
Michael K. Gilson University of California, San Diego
Jesse D. Bloom
Jesse D. Bloom Fred Hutchinson Cancer Research Center
Erik Lindahl
Erik Lindahl Stockholm University
Herbert W. Virgin
Herbert W. Virgin Altos Labs
Marilyn R. Gunner
Marilyn R. Gunner City College of New York
Justin R. Cross
Justin R. Cross Memorial Sloan Kettering Cancer Center
Craig B. Thompson
Craig B. Thompson Memorial Sloan Kettering Cancer Center
Carlos Bustamante
Carlos Bustamante Stanford University

External Links

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Best Scientists Citing John D. Chodera

Vijay S. Pande

Vijay S. Pande

Stanford University

Publications: 128

Benoît Roux

Benoît Roux

University of Chicago

Publications: 81

Jean-Philip Piquemal

Jean-Philip Piquemal

Sorbonne University

Publications: 74

Xuhui Huang

Xuhui Huang

University of Wisconsin–Madison

Publications: 67

Christof Schütte

Christof Schütte

Freie Universität Berlin

Publications: 67

John Z. H. Zhang

John Z. H. Zhang

New York University

Publications: 64

Gregory R. Bowman

Gregory R. Bowman

Washington University in St. Louis

Publications: 62

Pengyu Ren

Pengyu Ren

The University of Texas at Austin

Publications: 61

Alexander D. MacKerell

Alexander D. MacKerell

University of Maryland, Baltimore

Publications: 60

Wonpil Im

Wonpil Im

Lehigh University

Publications: 51

Cecilia Clementi

Cecilia Clementi

Freie Universität Berlin

Publications: 50

Ken A. Dill

Ken A. Dill

Stony Brook University

Publications: 50

Teresa Head-Gordon

Teresa Head-Gordon

University of California, Berkeley

Publications: 48

Michael K. Gilson

Michael K. Gilson

University of California, San Diego

Publications: 43

Bernard R. Brooks

Bernard R. Brooks

National Institutes of Health

Publications: 41

Emilio Gallicchio

Emilio Gallicchio

City University of New York

Publications: 39

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