World's Best Scientists 2026 revealed!

D-Index & Metrics

Animal Science and Veterinary

D-Index
61
Citations
13622
World Ranking
309
National Ranking
111

Overview

John B. Cole is affiliated with the United States Department of Agriculture in the United States. Their research primarily addresses issues related to genetics and molecular biology within agricultural sciences, with significant contributions to livestock genetics and breeding.

The scientist's recent publications focus on genomic studies in cattle. Notable papers include:

  • De novo assembly of the cattle reference genome with single-molecule sequencing, 2020, GigaScience
  • A multi-tissue atlas of regulatory variants in cattle, 2022, Nature Genetics
  • Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle, 2020, Genome Research
  • GWAS and fine-mapping of livability and six disease traits in Holstein cattle, 2020, BMC Genomics
  • Changes in genetic trends in US dairy cattle since the implementation of genomic selection, 2022, Journal of Dairy Science

Frequent co-authors collaborating with John B. Cole include:

  • P.M. VanRaden
  • Li Ma
  • George E. Liu
  • Curtis P. Van Tassell
  • Yahui Gao

The scientist has published in several key academic journals related to animal science and genetics, with repeated contributions in venues such as:

  • Journal of Dairy Science
  • JDS Communications
  • Zenodo (CERN European Organization for Nuclear Research)
  • Journal of Animal Science
  • bioRxiv (Cold Spring Harbor Laboratory)

John B. Cole's research fields of study include:

  • Biochemistry, Genetics and Molecular Biology
  • Agricultural and Biological Sciences

Within these broader fields, the scientist focuses on several subfields, including:

  • Genetics
  • Agronomy and Crop Science
  • Molecular Biology
  • Cancer Research
  • Animal Science and Zoology

Key topics addressed in the scientist's work are:

  • Genetic and phenotypic traits in livestock
  • Genetic Mapping and Diversity in Plants and Animals
  • Cancer-related molecular mechanisms research
  • Reproductive Physiology in Livestock
  • Effects of Environmental Stressors on Livestock
  • Genetics and Plant Breeding
  • Milk Quality and Mastitis in Dairy Cows

Best Publications

  • Temperature-Humidity Indices as Indicators of Milk Production Losses due to Heat Stress

    J. Bohmanova;I. Misztal;J.B. Cole

  • De novo assembly of the cattle reference genome with single-molecule sequencing.

    Benjamin D Rosen;Derek M Bickhart;Robert D Schnabel;Sergey Koren

  • Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection

    Adriana García-Ruiz;John B. Cole;Paul M. VanRaden;George R. Wiggans

  • Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows

    John B Cole;George R Wiggans;Li Ma;Tad S Sonstegard

  • Genomic Selection in Dairy Cattle: The USDA Experience.

    George R Wiggans;John B Cole;Suzanne M Hubbard;Tad S Sonstegard

  • A multi-tissue atlas of regulatory variants in cattle

    Unknown

  • Distribution and location of genetic effects for dairy traits

    J.B. Cole;P.M. VanRaden;J.R. O’Connell;C.P. Van Tassell

  • Invited review: overview of new traits and phenotyping strategies in dairy cattle with a focus on functional traits

    Christa Egger-Danner;J. B. Cole;J. E. Pryce;N. Gengler

  • A Large-Scale Genome-Wide Association Study in U.S. Holstein Cattle.

    Jicai Jiang;Li Ma;Dzianis Prakapenka;Paul M. VanRaden

  • Genomic imputation and evaluation using high-density Holstein genotypes.

    P.M. VanRaden;D.J. Null;M. Sargolzaei;G.R. Wiggans

  • Cattle sex-specific recombination and genetic control from a large pedigree analysis.

    Li Ma;Jeffrey R. O'Connell;Paul M. VanRaden;Botong Shen

  • Effect of artificial selection on runs of homozygosity in u.s. Holstein cattle.

    Eui-Soo Kim;John B. Cole;Heather Huson;George R. Wiggans

  • Selecting sequence variants to improve genomic predictions for dairy cattle.

    Paul M. VanRaden;Melvin E. Tooker;Jeffrey R. O’Connell;John B. Cole

  • Symposium review: Possibilities in an age of genomics: The future of selection indices.

    J.B. Cole;P.M. VanRaden

  • Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle

    Sarah D Cochran;John B Cole;Daniel J Null;Peter J Hansen

  • Genetic and environmental factors that affect gestation length in dairy cattle.

    H.D. Norman;J.R. Wright;M.T. Kuhn;S.M. Hubbard

  • Genomic Signatures Reveal New Evidences for Selection of Important Traits in Domestic Cattle

    Lingyang Xu;Derek M. Bickhart;John B. Cole;Steven G. Schroeder

  • Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle

    Lingzhao Fang;Wentao Cai;Wentao Cai;Shuli Liu;Shuli Liu;Oriol Canela-Xandri

  • Genomic inbreeding and relationships among Holsteins, Jerseys, and Brown Swiss

    P.M. VanRaden;K.M. Olson;G.R. Wiggans;J.B. Cole

  • Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height

    Yuri T. Utsunomiya;Adriana S. do Carmo;Roberto Carvalheiro;Haroldo H.R. Neves

  • Productive life and reasons for disposal of Holstein cows selected for large versus small body size.

    Leslie B Hansen;J. B. Cole;G. D. Marx;Anthony J Seykora

  • Functional annotation and Bayesian fine-mapping reveals candidate genes for important agronomic traits in Holstein bulls

    Jicai Jiang;John B. Cole;Ellen Freebern;Yang Da

  • Genome-wide association mapping for identification of quantitative trait loci for rectal temperature during heat stress in Holstein cattle.

    Serdal Dikmen;John B. Cole;Daniel J. Null;Peter J. Hansen

  • Identification of a Nonsense Mutation in CWC15 Associated with Decreased Reproductive Efficiency in Jersey Cattle

    Tad S. Sonstegard;John B. Cole;Paul M. VanRaden;Curtis P. Van Tassell

  • Distribution and location of genetic effects for dairy traits.

    J. B. Cole;P. M. VanRaden;J. R. O'Connell;C. P. van Tassell

Frequent Co-Authors

Paul M. VanRaden
Paul M. VanRaden United States Department of Agriculture
Derek M. Bickhart
Derek M. Bickhart Agricultural Research Service
Tad S. Sonstegard
Tad S. Sonstegard Recombinetics (United States)
Curtis P. Van Tassell
Curtis P. Van Tassell Agricultural Research Service
George E. Liu
George E. Liu Agricultural Research Service
Peter J. Hansen
Peter J. Hansen University of Florida
Christian Maltecca
Christian Maltecca North Carolina State University
Jennie E. Pryce
Jennie E. Pryce La Trobe University
J.L. Hutchison
J.L. Hutchison US Department of Agriculture
Nicolas Gengler
Nicolas Gengler Gembloux Agro-Bio Tech

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