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Engineering and Technology

D-Index
40
Citations
7611
World Ranking
7237
National Ranking
244

Overview

Ivo F. Sbalzarini is affiliated with the Max Planck Institute of Molecular Cell Biology and Genetics in Germany. Their research spans multiple fields, including engineering, computer science, and biochemistry, genetics, and molecular biology. The scientist's work intersects subfields such as computational mechanics, artificial intelligence, molecular biology, biophysics, and statistical and nonlinear physics.

The research topics covered by Ivo F. Sbalzarini include lattice Boltzmann simulation studies, model reduction and neural networks, cell image analysis techniques, fluid dynamics simulations and interactions, computer graphics and visualization techniques, Gaussian processes and Bayesian inference, and micro and nano robotics.

Frequent co-authors in their work include Pietro Incardona, Suryanarayana Maddu, Bevan L. Cheeseman, Abhinav Singh, and Michael Hecht.

Key publication venues where Ivo F. Sbalzarini has contributed extensively include arXiv (Cornell University), bioRxiv (Cold Spring Harbor Laboratory), Zenodo (CERN European Organization for Nuclear Research), Small Methods, and Forensic Science International Genetics.

Recent notable papers by Ivo F. Sbalzarini are:

  • A non-linear system patterns Rab5 GTPase on the membrane (2020, eLife)
  • Adaptive weighting of Bayesian physics informed neural networks for multitask and multiscale forward and inverse problems (2023, Journal of Computational Physics)
  • Collective cell migration during optic cup formation features changing cell-matrix interactions linked to matrix topology (2022, Current Biology)
  • Learning physically consistent differential equation models from data using group sparsity (2021, Physical review. E)
  • Stability selection enables robust learning of differential equations from limited noisy data (2022, Proceedings of the Royal Society A Mathematical Physical and Engineering Sciences)

Best Publications

  • Feature point tracking and trajectory analysis for video imaging in cell biology

    I.F. Sbalzarini;P. Koumoutsakos

  • Objective comparison of particle tracking methods

    Nicolas Chenouard;Ihor Smal;Fabrice de Chaumont;Martin Maška;Martin Maška

  • Single-particle tracking of murine polyoma virus-like particles on live cells and artificial membranes.

    Helge Ewers;Alicia E. Smith;Ivo F. Sbalzarini;Hauke Lilie

  • Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh.

    Aurélien Rizk;Grégory Paul;Pietro Incardona;Milica Bugarski

  • PPM: a highly efficient parallel particle-mesh library for the simulation of continuum systems

    I. F. Sbalzarini;J. H. Walther;M. Bergdorf;S. E. Hieber

  • ClearVolume: open-source live 3D visualization for light-sheet microscopy

    Loic A Royer;Martin Weigert;Ulrik Günther;Ulrik Günther;Nicola Maghelli

  • Curvature Filters Efficiently Reduce Certain Variational Energies

    Yuanhao Gong;Ivo F. Sbalzarini

  • Thermophoretic Motion of Water Nanodroplets Confined inside Carbon Nanotubes

    Harvey A Zambrano;Jens Honore Walther;Petros Koumoutsakos;Ivo Sbalzarini

  • Self-organized shape dynamics of active surfaces

    Alexander Mietke;Frank Jülicher;Ivo F. Sbalzarini;Ivo F. Sbalzarini

  • Coupling Image Restoration and Segmentation: A Generalized Linear Model/Bregman Perspective

    Grégory Paul;Janick Cardinale;Ivo F. Sbalzarini

  • A novel supervised trajectory segmentation algorithm identifies distinct types of human adenovirus motion in host cells

    Jo A. Helmuth;Christoph J. Burckhardt;Petros Koumoutsakos;Urs F. Greber

  • Simulations of (an)isotropic diffusion on curved biological surfaces.

    Ivo F. Sbalzarini;Arnold Hayer;Ari Helenius;Petros Koumoutsakos

  • MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis

    Arun Shivanandan;Arun Shivanandan;Aleksandra Radenovic;Ivo F Sbalzarini;Ivo F Sbalzarini

  • Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images

    Jo A Helmuth;Jo A Helmuth;Grégory Paul;Grégory Paul;Ivo F Sbalzarini;Ivo F Sbalzarini

  • A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks

    Rajesh Ramaswamy;Nélido González-Segredo;Ivo F. Sbalzarini

  • A Predictive 3D Multi-Scale Model of Biliary Fluid Dynamics in the Liver Lobule

    Kirstin Meyer;Oleksandr Ostrenko;Georgios Bourantas;Georgios Bourantas;Georgios Bourantas;Hernan Morales-Navarrete

  • High-resolution cell outline segmentation and tracking from phase-contrast microscopy images

    Mark Ambühl;C. Brepsant;Jean-Jacques Meister;Alexander Verkhovsky

  • Discretization correction of general integral PSE Operators for particle methods

    Birte Schrader;Sylvain Reboux;Ivo F. Sbalzarini

  • Large‐scale parallel discrete element simulations of granular flow

    Jens Honore Walther;Ivo F. Sbalzarini

  • Cell-free transmission of human adenovirus by passive mass transfer in cell culture simulated in a computer model.

    Artur Yakimovich;Heidi Gumpert;Christoph J. Burckhardt;Verena A. Lütschg

Frequent Co-Authors

Petros Koumoutsakos
Petros Koumoutsakos Harvard University
Erik Meijering
Erik Meijering University of New South Wales
Marino Zerial
Marino Zerial Max Planck Society
Jens Honore Walther
Jens Honore Walther Technical University of Denmark
Michael L. Hecht
Michael L. Hecht Pennsylvania State University
Urs F. Greber
Urs F. Greber University of Zurich
Wiro J. Niessen
Wiro J. Niessen Erasmus University Rotterdam
Ari Helenius
Ari Helenius ETH Zurich
Frank Jülicher
Frank Jülicher Max Planck Society
Christian Müller
Christian Müller Chalmers University of Technology

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