D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Chemistry D-index 56 Citations 12,163 147 World Ranking 6269 National Ranking 482

Overview

What is he best known for?

The fields of study he is best known for:

  • Enzyme
  • Gene
  • Amino acid

His primary scientific interests are in Molecular dynamics, Biophysics, Aquaporin, Chemical physics and Protein structure. Bert L. de Groot has researched Molecular dynamics in several fields, including Test particle, Electrostatics and Bilayer. His Biophysics study combines topics from a wide range of disciplines, such as Proteins metabolism, Plasma protein binding, Biochemistry, Statistical potential and Conductance.

His biological study spans a wide range of topics, including Membrane channel, Lipid bilayer and Electrochemical gradient. His research in Chemical physics intersects with topics in Ion, Force field and Protein dynamics. Bert L. de Groot combines subjects such as Crystallography and Membrane protein with his study of Protein structure.

His most cited work include:

  • Molecular Anatomy of a Trafficking Organelle (1648 citations)
  • CHARMM36m: An improved force field for folded and intrinsically disordered proteins (1149 citations)
  • Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution (851 citations)

What are the main themes of his work throughout his whole career to date?

His scientific interests lie mostly in Molecular dynamics, Biophysics, Crystallography, Chemical physics and Membrane. His Molecular dynamics research includes themes of Protein structure, Peptide, Statistical physics and Potassium channel. The Biophysics study combines topics in areas such as Biochemistry, Aquaporin, Lipid bilayer and Permeation.

His Aquaporin research is multidisciplinary, incorporating elements of Aquaporin 4, Xenopus and Biological membrane. His work on Helix as part of general Crystallography research is often related to Side chain, thus linking different fields of science. His work carried out in the field of Chemical physics brings together such families of science as Ion, Intrinsically disordered proteins and Molecule, Force field.

He most often published in these fields:

  • Molecular dynamics (40.33%)
  • Biophysics (31.28%)
  • Crystallography (19.34%)

What were the highlights of his more recent work (between 2018-2021)?

  • Molecular dynamics (40.33%)
  • Biophysics (31.28%)
  • Statistical physics (7.82%)

In recent papers he was focusing on the following fields of study:

His main research concerns Molecular dynamics, Biophysics, Statistical physics, Potassium channel and Membrane. His Molecular dynamics study also includes

  • Hemoglobin which is related to area like Size dependence,
  • Thermodynamics, which have a strong connection to Molecular biophysics. His studies deal with areas such as Protein structure, Conductance, Mechanosensitive channels and Drug design as well as Biophysics.

His Protein structure research incorporates themes from Mutation, Molecular recognition, Representation, Mutant and Magic angle spinning. The various areas that Bert L. de Groot examines in his Statistical physics study include Non-equilibrium thermodynamics, Work, Free energy perturbation and Force field. His Potassium channel study integrates concerns from other disciplines, such as Ion, Chemical physics and Ion channel.

Between 2018 and 2021, his most popular works were:

  • More bang for your buck: Improved use of GPU nodes for GROMACS 2018 (55 citations)
  • A pharmacological master key mechanism that unlocks the selectivity filter gate in K+ channels. (40 citations)
  • A molecular mechanism for transthyretin amyloidogenesis. (29 citations)

In his most recent research, the most cited papers focused on:

  • Enzyme
  • Gene
  • Amino acid

Bert L. de Groot spends much of his time researching Molecular dynamics, Biophysics, Statistical physics, Membrane and Population. His work in the fields of Molecular dynamics, such as Free energy perturbation, intersects with other areas such as Protocol. His study of Gating is a part of Biophysics.

His Membrane study incorporates themes from Selectivity, Efflux, Glycerol and Aquaporin. The Protein structure study which covers Amyloidosis that intersects with Mutation. As part of one scientific family, Bert L. de Groot deals mainly with the area of Potassium channel, narrowing it down to issues related to the Conduction pathway, and often Chemical physics and Ion channel.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

Molecular Anatomy of a Trafficking Organelle

Shigeo Takamori;Matthew Holt;Katinka Stenius;Edward A. Lemke.
Cell (2006)

2078 Citations

Water Permeation Across Biological Membranes: Mechanism and Dynamics of Aquaporin-1 and GlpF

Bert L. de Groot;Helmut Grubmüller.
Science (2001)

1495 Citations

CHARMM36m: An improved force field for folded and intrinsically disordered proteins

Jing Huang;Sarah Rauscher;Grzegorz Nawrocki;Ting Ran.
Nature Methods (2017)

1417 Citations

Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution

Oliver F. Lange;Nils Alexander Lakomek;Christophe Farès;Gunnar F. Schröder.
Science (2008)

1055 Citations

Ligand docking and binding site analysis with PyMOL and Autodock/Vina.

Daniel Seeliger;Bert L. de Groot.
Journal of Computer-aided Molecular Design (2010)

1047 Citations

g_wham—A Free Weighted Histogram Analysis Implementation Including Robust Error and Autocorrelation Estimates

Jochen S. Hub;Bert L. de Groot;David van der Spoel.
Journal of Chemical Theory and Computation (2010)

980 Citations

Mechanism of selectivity in aquaporins and aquaglyceroporins

Jochen S. Hub;Bert L. de Groot.
Proceedings of the National Academy of Sciences of the United States of America (2008)

411 Citations

Structure and function of water channels

Yoshinori Fujiyoshi;Yoshinori Fujiyoshi;Kaoru Mitsuoka;Bert L de Groot;Ansgar Philippsen.
Current Opinion in Structural Biology (2002)

342 Citations

The mechanism of proton exclusion in the aquaporin-1 water channel

Bert L. de Groot;Tomaso Frigato;Volkhard Helms;Helmut Grubmüller.
Journal of Molecular Biology (2003)

317 Citations

Acyl chain order parameter profiles in phospholipid bilayers: computation from molecular dynamics simulations and comparison with 2H NMR experiments.

Louic S. Vermeer;Bert L. de Groot;Valérie Réat;Alain Milon.
European Biophysics Journal (2007)

305 Citations

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