Trupti Joshi

Best Publications

• Genome sequence of the palaeopolyploid soybean

  Jeremy Schmutz;Steven B. Cannon;Jessica Schlueter;Jessica Schlueter;Jianxin Ma

  5016
  Citations

• An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants

  Marc Libault;Andrew Farmer;Trupti Joshi;Kaori Takahashi

  437
  Citations

• Inferring gene regulatory networks from multiple microarray datasets

  Yong Wang;Trupti Joshi;Xiang-Sun Zhang;Dong Xu

  387
  Citations

• A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

  Lourdes Pena-Castillo;Murat Tasan;Chad L Myers;Hyunju Lee

  298
  Citations

• Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population

  Robert J. Schmitz;Yupeng He;Yupeng He;Oswaldo Valdés-López;Saad M. Khan

  283
  Citations

• MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction.

  Duolin Wang;Shuai Zeng;Chunhui Xu;Wangren Qiu;Wangren Qiu

  280
  Citations

• Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis

  Gunvant Patil;Babu Valliyodan;Rupesh Deshmukh;Silvas Prince

  253
  Citations

• Transcriptional and Physiological Responses of Bradyrhizobium japonicum to Desiccation-Induced Stress

  Eddie J. Cytryn;Dipen P. Sangurdekar;John G. Streeter;William L. Franck

  226
  Citations

• The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family.

  Mary Galli;Arjun Khakhar;Zefu Lu;Zongliang Chen

  201
  Citations

• Landscape of genomic diversity and trait discovery in soybean.

  Babu Valliyodan;Dan Qiu;Gunvant Patil;Peng Zeng

  194
  Citations

• Targeting CD37-positive lymphoid malignancies with a novel engineered small modular immunopharmaceutical

  Xiaobin B Zhao;Rosa Lapalombella;Trupti Joshi;Carolyn Cheney

  192
  Citations

• Genome Editing in Plants: Exploration of Technological Advancements and Challenges

  Sanskriti Vats;Surbhi Kumawat;Virender Kumar;Gunvant B Patil

  173
  Citations

• Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of Soybean.

  Yang Liu;Duolin Wang;Fei He;Juexin Wang

  150
  Citations

• Prediction of novel miRNAs and associated target genes in Glycine max.

  Trupti Joshi;Zhe Yan;Marc Libault;Dong-Hoon Jeong

  145
  Citations

• Legume Transcription Factor Genes: What Makes Legumes So Special?

  Marc Libault;Trupti Joshi;Vagner A. Benedito;Dong Xu

  144
  Citations

• Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression

  Martin Hajduch;Leonard B. Hearne;Jan A. Miernyk;Jill E. Casteel

  135
  Citations

• Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases.

  Satish K Guttikonda;Joshi Trupti;Naveen C Bisht;Hui Chen

  130
  Citations

• Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

  Li Song;Silvas Prince;Babu Valliyodan;Trupti Joshi

  128
  Citations

• Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response

  Truyen N. Quach;Hanh T. M. Nguyen;Hanh T. M. Nguyen;Babu Valliyodan;Trupti Joshi

  123
  Citations

• Soybean Knowledge Base (SoyKB): a Web Resource for Soybean Translational Genomics

  Trupti Joshi;Kapil Patil;Michael R Fitzpatrick;Levi D Franklin

  122
  Citations