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Genetics

D-Index
94
Citations
223469
World Ranking
912
National Ranking
128

Overview

Toby J. Gibson is affiliated with the European Bioinformatics Institute in the United Kingdom. Their research contributions primarily lie within the broad field of Biochemistry, Genetics and Molecular Biology, with a significant focus on Molecular Biology. Other subfields in which they have published include Materials Chemistry, Epidemiology, Public Health, Environmental and Occupational Health, and Cell Biology.

The scientist's work revolves around key topics such as Protein Structure and Dynamics, Bioinformatics and Genomic Networks, Genomics and Phylogenetic Studies, RNA Research and Splicing, Ubiquitin and proteasome pathways, Research on Leishmaniasis Studies, and RNA and protein synthesis mechanisms.

Recent papers authored or co-authored by Toby J. Gibson include:

  • The Eukaryotic Linear Motif resource: 2022 release (2021, Nucleic Acids Research)
  • PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins (2020, Nucleic Acids Research)
  • ELM-the Eukaryotic Linear Motif resource-2024 update (2023, Nucleic Acids Research)
  • PDBe-KB: collaboratively defining the biological context of structural data (2021, Nucleic Acids Research)
  • Systematic discovery of protein interaction interfaces using AlphaFold and experimental validation (2024, Molecular Systems Biology)

Frequent co-authors who have collaborated extensively with Toby J. Gibson include:

  • Lucía B. Chemes
  • András Zeke
  • László Dobson
  • Cristina Marino-Buslje
  • Hugo Sámano-Sánchez

Publications by this scientist have appeared predominantly in a range of venues, reflecting the interdisciplinary nature of their work. These venues include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nucleic Acids Research
  • Trends in Biochemical Sciences
  • Methods in molecular biology
  • Database

Best Publications

  • CLUSTAL W: IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE

    Julie D. Thompson;Desmond G. Higgins;Toby J. Gibson

  • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

    Julie D. Thompson;Toby J. Gibson;Frederica Plewniak;Francois Jeanmougin

  • Clustal W and Clustal X version 2.0

    M.A. Larkin;G. Blackshields;N.P. Brown;R. Chenna

  • Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

    Fabian Sievers;Andreas Wilm;David Dineen;Toby J Gibson

  • Multiple sequence alignment with the Clustal series of programs

    Ramu Chenna;Hideaki Sugawara;Tadashi Koike;Rodrigo Lopez

  • Multiple sequence alignment with Clustal X

    François Jeanmougin;Julie D. Thompson;Manolo Gouy;Desmond G. Higgins

  • Multiple Sequence Alignment Using ClustalW and ClustalX

    Julie D. Thompson;Toby. J. Gibson;Des G. Higgins

  • Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.

    M D Biggin;T J Gibson;G F Hong

  • DNA sequence and expression of the B95-8 Epstein—Barr virus genome

    R. Baer;R. Baer;A. T. Bankier;M. D. Biggin;P. L. Deininger

  • USING CLUSTAL FOR MULTIPLE SEQUENCE ALIGNMENTS

    Desmond G Higgins;Julie D Thompson;Toby J Gibson

  • Protein Disorder Prediction: Implications for Structural Proteomics

    Rune Linding;Lars Juhl Jensen;Francesca Diella;Peer Bork

  • GlobPlot: exploring protein sequences for globularity and disorder

    Rune Linding;Robert B. Russell;Victor Neduva;Toby J. Gibson

  • The PHD finger: Implications for chromatin-mediated transcriptional regulation

    Aasland R;Gibson Tj;Stewart Af

  • ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins

    Pål Puntervoll;Rune Linding;Christine Gemünd;Sophie Chabanis-Davidson

  • Ancient protostome origin of chemosensory ionotropic glutamate receptors and the evolution of insect taste and olfaction

    Vincent Croset;Raphael Rytz;Scott F. Cummins;Aidan Budd

  • The PH domain: a common piece in the structural pathcwork of signalling proteins

    Andrea Musacchio;Toby Gibson;Peter Rice;Julie Thompson

  • Phospho.ELM: a database of phosphorylation sites—update 2011

    Holger Dinkel;Claudia Chica;Allegra Via;Cathryn M. Gould

  • Attributes of short linear motifs.

    Norman E. Davey;Kim Van Roey;Robert J. Weatheritt;Grischa Toedt

  • A Million Peptide Motifs for the Molecular Biologist

    Peter Tompa;Peter Tompa;Norman E. Davey;Toby J. Gibson;M. Madan Babu

  • Phospho.ELM: a database of phosphorylation sites—update 2008

    Francesca Diella;Cathryn M. Gould;Claudia Chica;Allegra Via

Frequent Co-Authors

Norman E. Davey
Norman E. Davey Institute of Cancer Research
marius ueffing
marius ueffing University of Tübingen
Annalisa Pastore
Annalisa Pastore King's College London
Desmond G. Higgins
Desmond G. Higgins University College Dublin
Robert B. Russell
Robert B. Russell Heidelberg University
Martijn A. Huynen
Martijn A. Huynen Radboud University Medical Center
Ronald Roepman
Ronald Roepman Radboud University
Peer Bork
Peer Bork European Molecular Biology Laboratory
Rachel H. Giles
Rachel H. Giles Utrecht University
Hannie Kremer
Hannie Kremer Radboud University

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