World's Best Scientists 2026 revealed!

D-Index & Metrics

Computer Science

D-Index
47
Citations
10667
World Ranking
6407
National Ranking
136

Research.com Recognitions

  • 2020 - Fellow of the Association for the Advancement of Artificial Intelligence (AAAI) For significant contributions to the theory and algorithms of constraint-based reasoning and to their applications in computational biology.

Overview

Thomas Schiex is affiliated with INRAE, the Institut national de recherche pour l'agriculture, l'alimentation et l'environnement in France. Their research spans multiple disciplines, primarily focusing on biochemistry, genetics, molecular biology, and computer science.

The main fields of study in Thomas Schiex's work include:

  • Biochemistry, Genetics and Molecular Biology
  • Computer Science

They have contributed extensively to subfields such as molecular biology, genetics, computational theory and mathematics, ecology, and computer networks and communications.

Prominent research topics that characterize their publications include:

  • Protein Structure and Dynamics
  • RNA and protein synthesis mechanisms
  • Bacterial Genetics and Biotechnology
  • Bacteriophages and microbial interactions
  • Constraint Satisfaction and Optimization
  • Machine Learning in Bioinformatics
  • Computational Drug Discovery Methods

Thomas Schiex has a record of publications in a range of journals and venues with multiple papers appearing in bioRxiv (Cold Spring Harbor Laboratory) and the International Journal of Molecular Sciences. Other publication venues include the Journal of the American Chemical Society, PLoS Pathogens, and Protein Engineering Design and Selection.

Their recent papers include:

  • Protein Design with Deep Learning, 2021, International Journal of Molecular Sciences
  • Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase, 2021, Journal of the American Chemical Society
  • A Comparative Study to Decipher the Structural and Dynamics Determinants Underlying the Activity and Thermal Stability of GH-11 Xylanases, 2021, International Journal of Molecular Sciences
  • Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium, 2022, PLoS Pathogens
  • Molecular flexibility in computational protein design: an algorithmic perspective, 2021, Protein Engineering Design and Selection

Thomas Schiex often collaborates with a group of frequent co-authors, including Sophie Barbe, Simon de Givry, Jelena Vučinić, David Simoncini, and Manon Ruffini.

In 2020, they were recognized as a Fellow of the Association for the Advancement of Artificial Intelligence (AAAI) for contributions to the theory and algorithms of constraint-based reasoning and their applications in computational biology.

Best Publications

  • Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

    Pierre Abad;Pierre Abad;Jérôme Gouzy;Jean-Marc Aury;Jean-Marc Aury;Philippe Castagnone-Sereno;Philippe Castagnone-Sereno

  • Valued constraint satisfaction problems: hard and easy problems

    Thomas Schiex;Helene Fargier;Gerard Verfaillie

  • Current methods of gene prediction, their strengths and weaknesses

    Catherine Mathé;Marie‐France Sagot;Thomas Schiex;Pierre Rouzé

  • Carhta Gene: multipopulation integrated genetic and radiation hybrid mapping

    Simon De Givry;Martin Bouchez;Patrick Chabrier;Denis Milan

  • NOGOOD RECORDING FOR STATIC AND DYNAMIC CONSTRAINT SATISFACTION PROBLEMS

    Thomas Schiex;Gérard Verfaillie

  • Semiring-Based CSPs and Valued CSPs: Frameworks, Properties,and Comparison

    S. Bistarelli;U. Montanari;F. Rossi;T. Schiex

  • Radio Link Frequency Assignment

    B. Cabon;S. de Givry;L. Lobjois;T. Schiex

  • Solution reuse in dynamic constraint satisfaction problems

    Gerard Verfaillie;Thomas Schiex

  • Solving weighted CSP by maintaining arc consistency

    Javier Larrosa;Thomas Schiex

  • Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis.

    Etienne‐Pascal Journet;Diederik van Tuinen;Jérome Gouzy;Hervé Crespeau

  • Russian doll search for solving constraint optimization problems

    Gérard Verfaillie;Michel Lemaître;Thomas Schiex

  • Possibilistic constraint satisfaction problems or How to handle soft constraints

    Thomas Schiex

  • Arc consistency for soft constraints

    Martin Cooper;Thomas Schiex

  • In the quest of the best form of local consistency for weighted CSP

    Javier Larrosa;Thomas Schiex

  • Soft arc consistency revisited

    M. C. Cooper;S. de Givry;M. Sanchez;T. Schiex

  • Selecting preferred solutions in Fuzzy Constraint Satisfaction Problems

    H. Fargier;J. Lang;T. Schiex

  • CARTHAGENE: Constructing and Joining Maximum Likelihood Genetic Maps

    Thomas Schiex;Christine Gaspin

  • Mixed constraint satisfaction: a framework for decision problems under incomplete knowledge

    Hélène Fargier;Jérôme Lang;Thomas Schiex

  • Maintaining reversible DAC for Max-CSP

    Javier Larrosa;Pedro Meseguer;Thomas Schiex

  • EUGÈNE: An Eukaryotic Gene Finder That Combines Several Sources of Evidence

    Thomas Schiex;Annick Moisan;Pierre Rouzé

Frequent Co-Authors

Jérôme Gouzy
Jérôme Gouzy Federal University of Toulouse Midi-Pyrénées
Patrick Wincker
Patrick Wincker University of Paris-Saclay
Jérôme Lang
Jérôme Lang Paris Dauphine University
Jean-Marc Aury
Jean-Marc Aury University of Paris-Saclay
Julie Poulain
Julie Poulain French Alternative Energies and Atomic Energy Commission (CEA)
Stephane Rombauts
Stephane Rombauts Ghent University
Jérôme Salse
Jérôme Salse INRAE : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement
Dominique Brunel
Dominique Brunel INRAE : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement
Rod A. Wing
Rod A. Wing University of Arizona
Yves Van de Peer
Yves Van de Peer Ghent University

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