Pavel Neumann

Best Publications

• RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

  Petr Novák;Pavel Neumann;Jiří Pech;Jaroslav Steinhaisl

  789
  Citations

• A reference genome for pea provides insight into legume genome evolution

  Jonathan Kreplak;Mohammed Amin Madoui;Petr Cápal;Petr Novák

  514
  Citations

• Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

  Petr Novák;Pavel Neumann;Jiří Macas

  513
  Citations

• Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

  Pavel Neumann;Petr Novák;Nina Hoštáková;Jiří Macas

  421
  Citations

• TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads

  Petr Novák;Laura Ávila Robledillo;Andrea Koblížková;Iva Vrbová

  329
  Citations

• Repetitive DNA in the pea ( Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

  Jiří Macas;Pavel Neumann;Alice Navrátilová

  323
  Citations

• Pea (Pisum sativum L.) in the Genomic Era

  Petr Smýkal;Gregoire Aubert;Judith Burstin;Clarice J. Coyne

  310
  Citations

• Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2.

  Petr Novák;Pavel Neumann;Jiří Macas

  280
  Citations

• Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution

  Zhiyun Gong;Zhiyun Gong;Yufeng Wu;Andrea Koblížková;Giovana A. Torres;Giovana A. Torres

  262
  Citations

• Plant centromeric retrotransposons: a structural and cytogenetic perspective

  Pavel Neumann;Alice Navrátilová;Andrea Koblížková;Eduard Kejnovský

  250
  Citations

• In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.

  Jiří Macas;Petr Novák;Jaume Pellicer;Jana Čížková

  229
  Citations

• Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences

  Mihaela Maria Martis;Sonja Klemme;Ali Mohammad Banaei-Moghaddam;Frank R. Blattner

  228
  Citations

• The giant diploid faba genome unlocks variation in a global protein crop

  Unknown

  181
  Citations

• Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains

  Pavel Neumann;Alice Navrátilová;Elizabeth Schroeder-Reiter;Andrea Koblížková

  157
  Citations

• Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

  Laura J. Kelly;Laura J. Kelly;Simon Renny‐Byfield;Simon Renny‐Byfield;Jaume Pellicer;Jiří Macas

  155
  Citations

• Comparative Genome Analysis Reveals Divergent Genome Size Evolution in a Carnivorous Plant Genus

  Giang T. H. Vu;Giang T. H. Vu;Thomas Schmutzer;Fabian Bull;Hieu X. Cao

  153
  Citations

• Significant Expansion of Vicia pannonica Genome Size Mediated by Amplification of a Single Type of Giant Retroelement

  Pavel Neumann;Andrea Koblízková;Alice Navrátilová;Jirí Macas

  144
  Citations

• Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice

  Huihuang Yan;Shinji Kikuchi;Pavel Neumann;Wenli Zhang

  141
  Citations

• Repeat-sequence turnover shifts fundamentally in species with large genomes

  Petr Novák;Maïté S. Guignard;Maïté S. Guignard;Pavel Neumann;Laura J. Kelly;Laura J. Kelly

  136
  Citations

• Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced.

  Pavel Neumann;Dana Pozarkova;Jiri Macas

  129
  Citations