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Biology and Biochemistry

D-Index
55
Citations
9607
World Ranking
15181
National Ranking
418

Overview

Mark S. Baker is affiliated with Macquarie University in Australia. Their research primarily spans the fields of Medicine and Biochemistry, Genetics and Molecular Biology, with significant emphasis on Molecular Biology, Spectroscopy, Surgery, Infectious Diseases, and Ophthalmology.

The scientist's work addresses a variety of topics, including:

  • Advanced Proteomics Techniques and Applications
  • Metabolomics and Mass Spectrometry Studies
  • Machine Learning in Bioinformatics
  • Mass Spectrometry Techniques and Applications
  • Vaccines and Immunoinformatics Approaches
  • Genetics, Bioinformatics, and Biomedical Research
  • Ubiquitin and Proteasome Pathways

The recent papers associated with Mark S. Baker include:

  • A high-stringency blueprint of the human proteome, 2020, Nature Communications
  • Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project, 2020, Journal of Proteome Research
  • Role of Multiomics Data to Understand Host-Pathogen Interactions in COVID-19 Pathogenesis, 2021, Journal of Proteome Research
  • π-HuB: the proteomic navigator of the human body, 2024, Nature
  • Neuroserpin gene therapy inhibits retinal ganglion cell apoptosis and promotes functional preservation in glaucoma, 2023, Molecular Therapy

Frequent co-authors include:

  • Seong Beom Ahn
  • Edouard C. Nice
  • Abidali Mohamedali
  • Gilbert S. Omenn
  • Christopher M. Overall

Mark S. Baker's publications appear often in the following venues:

  • Journal of Proteome Research
  • Nature
  • The American Journal of Surgery
  • Nature Communications
  • Molecular Therapy

Best Publications

  • How many human proteoforms are there

    Ruedi Aebersold;Jeffrey N. Agar;I. Jonathan Amster;Mark S. Baker

  • Evidence of oxidant-induced injury to epithelial cells during inflammatory bowel disease.

    S J McKenzie;M S Baker;M S Baker;G D Buffinton;W F Doe

  • Mechanical stretch: physiological and pathological implications for human vascular endothelial cells

    Nurul F. Jufri;Abidali Mohamedali;Alberto Avolio;Mark S. Baker

  • The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays

    Jochen M. Schwenk;Gilbert S. Omenn;Zhi Sun;David S. Campbell

  • High-abundance protein depletion: comparison of methods for human plasma biomarker discovery.

    Veronika Polaskova;Amit Kapur;Alamgir Khan;Mark P. Molloy

  • A high-stringency blueprint of the human proteome

    Subash Adhikari;Edouard C. Nice;Edouard C. Nice;Eric W Deutsch;Lydie Lane

  • Overexpression of αvβ6 integrin in serous epithelial ovarian cancer regulates extracellular matrix degradation via the plasminogen activation cascade

    N. Ahmed;F. Pansino;Riley Clyde;P. Murthi;P. Murthi

  • Effects of an intensive 12-wk training program by elite swimmers on neutrophil oxidative activity.

    David B. Pyne;David B. Pyne;David B. Pyne;Mark S. Baker;Mark S. Baker;Mark S. Baker;Peter A. Fricker;Peter A. Fricker;Peter A. Fricker;Warren A. Mcdonald;Warren A. Mcdonald;Warren A. Mcdonald

  • Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1

    Eric W. Deutsch;Christopher M. Overall;Jennifer E. Van Eyk;Mark S. Baker

  • Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)

    Christopher R. Kinsinger;James Apffel;Mark Baker;Xiaopeng Bian

  • Proteomic analysis of human plasma: Failure of centrifugal ultrafiltration to remove albumin and other high molecular weight proteins

    Harry M. Georgiou;Gregory E. Rice;Mark S. Baker

  • Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data

    Vera Ignjatovic;Philipp E. Geyer;Philipp E. Geyer;Krishnan K. Palaniappan;Jessica E. Chaaban

  • Standard guidelines for the chromosome-centric human proteome project

    Young-Ki Paik;Gilbert S Omenn;Mathias Uhlen;Samir Hanash

  • The effect of pH on the conversion of superoxide to hydroxyl free radicals.

    Mark S. Baker;Janusz M. Gebicki

  • Direct integrin αvβ6-ERK binding: implications for tumour growth

    Nuzhat Ahmed;Jun Niu;Douglas J Dorahy;Xinhua Gu

  • The plasminogen activator inhibitor-2 gene is not required for normal murine development or survival

    Kristiann M. Dougherty;Julia M. Pearson;Angela Y. Yang;Randal J. Westrick

  • αvβ6 Integrin-A Marker for the Malignant Potential of Epithelial Ovarian Cancer

    Nuzhat Ahmed;Clyde Riley;Gregory E. Rice;Michael A. Quinn

  • Comparative N-glycan profiling of colorectal cancer cell lines reveals unique bisecting GlcNAc and α-2,3-linked sialic acid determinants are associated with membrane proteins of the more metastatic/aggressive cell lines

    Manveen K. Sethi;Morten Thaysen-Andersen;Joshua T. Smith;Mark S. Baker

  • Inhibition of Cancer Cell Urokinase Plasminogen Activator by Its Specific Inhibitor PAI-2 and Subsequent Effects on Extracellular Matrix Degradation

    Mark S. Baker;Pamela Bleakley;Graeme C. Woodrow;William F. Doe

  • Enhanced Fluorescence Detection on Homogeneous Gold Colloid Self-Assembled Monolayer Substrates

    Fang Xie;Mark S. Baker;Ewa M. Goldys

Frequent Co-Authors

William S. Hancock
William S. Hancock Northeastern University
Edouard C. Nice
Edouard C. Nice Monash University
Gilbert S. Omenn
Gilbert S. Omenn University of Michigan–Ann Arbor
Shoba Ranganathan
Shoba Ranganathan Macquarie University
Gregory E. Rice
Gregory E. Rice University of Queensland
Young Ki Paik
Young Ki Paik Yonsei University
Michael A. Quinn
Michael A. Quinn International Gynaecological Cancer Society
Eric W. Deutsch
Eric W. Deutsch University of Washington
Nicolle H. Packer
Nicolle H. Packer Macquarie University

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