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José Luís Oliveira

José Luís Oliveira

D-Index & Metrics

Computer Science

D-Index
34
Citations
4998
World Ranking
12176
National Ranking
38

Overview

José Luís Oliveira is affiliated with the University of Aveiro in Portugal. Their research spans multiple fields, primarily in Computer Science and Biochemistry, Genetics and Molecular Biology. Within these broad areas, their work is notably concentrated in subfields such as Molecular Biology, Artificial Intelligence, Information Systems, Computer Networks and Communications, and Information Systems and Management.

Their research topics cover a range of specialized areas, including Biomedical Text Mining and Ontologies, Scientific Computing and Data Management, Computational Drug Discovery Methods, Mental Health via Writing, Sentiment Analysis and Opinion Mining, Machine Learning in Healthcare, and Semantic Web and Ontologies.

José Luís Oliveira has contributed to several research publications over recent years. Some of the notable papers include:

  • Designing optimized drug candidates with Generative Adversarial Network, 2022, Journal of Cheminformatics
  • DTITR: End-to-end drug-target binding affinity prediction with transformers, 2022, Computers in Biology and Medicine
  • Software tools and platforms in Digital Pathology: a review for clinicians and computer scientists, 2022, Journal of Pathology Informatics
  • A methodology for cohort harmonisation in multicentre clinical research, 2021, Informatics in Medicine Unlocked
  • TAG-DTA: Binding-region-guided strategy to predict drug-target affinity using transformers, 2023, Expert Systems with Applications

The venues where José Luís Oliveira frequently publishes include:

  • Studies in health technology and informatics
  • Computers in Biology and Medicine
  • Informatics in Medicine Unlocked
  • Revista fisio&terapia.
  • SSRN Electronic Journal

The scientist has collaborated extensively with several coauthors, among whom are João Rafael Almeida, Rui Pedro Lopes, Sérgio Matos, Olga Fajarda, and Joel P. Arrais.

In addition to journal articles, José Luís Oliveira has published books, including one with Even3 Publicações eBooks titled 3º Livro de Memórias: O que pode um corpo?, which is scheduled for 2025.

Best Publications

  • Representation learning for mammography mass lesion classification with convolutional neural networks

    John Arevalo;Fabio A. González;Raúl Ramos-Pollán;Jose L. Oliveira

  • Twitter: a good place to detect health conditions.

    Víctor M. Prieto;Sérgio Matos;Manuel Álvarez;Fidel Cacheda

  • Convolutional neural networks for mammography mass lesion classification

    John Arevalo;Fabio A. Gonzalez;Raul Ramos-Pollan;Jose L. Oliveira

  • Passive Sensing of Health Outcomes Through Smartphones: Systematic Review of Current Solutions and Possible Limitations

    Alina Trifan;Maryse Oliveira;José Luís Oliveira

  • Gimli: open source and high-performance biomedical name recognition

    David Campos;Sérgio Matos;José Luís Oliveira

  • Large Scale Comparative Codon-Pair Context Analysis Unveils General Rules that Fine-Tune Evolution of mRNA Primary Structure

    Gabriela Moura;Miguel Pinheiro;Joel Arrais;Ana Cristina Gomes

  • Dicoogle - an open source peer-to-peer PACS.

    Carlos Costa;Carlos Ferreira;Luís Bastião;Luís S. Ribeiro

  • Biomedical Named Entity Recognition: A Survey of Machine-Learning Tools

    David Campos;Sérgio Matos;José Luís Oliveira

  • On the parameter optimization of Support Vector Machines for binary classification

    Paulo Gaspar;Jaime G. Carbonell;José Luís Oliveira

  • mRNA secondary structure optimization using a correlated stem–loop prediction

    Paulo Gaspar;Gabriela Moura;Manuel A.S. Santos;José Luís Oliveira

  • BeCAS: biomedical concept recognition services and visualization

    Tiago Nunes;David Campos;Sérgio Matos;José Luís Oliveira

  • EuGene: Maximizing synthetic gene design for heterologous expression

    Paulo Gaspar;José Luís Oliveira;Jörg Frommlet;Manuel A. S. Santos

  • A PACS archive architecture supported on cloud services.

    Luís A. Bastião Silva;Carlos Costa;José Luis Oliveira

  • A modular framework for biomedical concept recognition

    David Campos;Sérgio Matos;José Luís Oliveira

  • From the salivary proteome to the OralOme: Comprehensive molecular oral biology

    Nuno Rosa;Maria José Correia;Joel P. Arrais;Pedro Lopes

  • On the parameter optimization of Support Vector Machines for binary classification

    Unknown

  • Open-Source Electronic Health Record Systems for Low-Resource Settings: Systematic Review.

    Assel Syzdykova;André Malta;Maria Zolfo;Ermias Diro

  • Indexing and retrieving DICOM data in disperse and unstructured archives

    Carlos Costa;Filipe Freitas;Marco Pereira;Augusto Silva

  • The EU-ADR Web Platform: delivering advanced pharmacovigilance tools

    José Luis Oliveira;Pedro Lopes;Tiago Nunes;David Campos

  • Concept-based query expansion for retrieving gene related publications from MEDLINE

    Sérgio Matos;Joel P Arrais;João Maia-Rodrigues;José Luis Oliveira

  • Improving data and knowledge management to better integrate health care and research

    M. Cases;L. I. Furlong;J. Albanell;R. B. Altman

Frequent Co-Authors

Manuel A. S. Santos
Manuel A. S. Santos University of Aveiro
José M. C. Ribeiro
José M. C. Ribeiro National Institutes of Health
Fabio A. González
Fabio A. González National University of Colombia
Martijn J. Schuemie
Martijn J. Schuemie Janssen (Belgium)
Erik M. van Mulligen
Erik M. van Mulligen Erasmus University Rotterdam
Francisco Amado
Francisco Amado University of Aveiro
Mark A. Musen
Mark A. Musen Stanford University

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