James R. Cole

Research.com Recognitions

• 1959 - Fellow of the American Association for the Advancement of Science (AAAS)
• 1957 - Fellow of the American Association for the Advancement of Science (AAAS)

Overview

Best Publications

• Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

  Qiong Wang;George M. Garrity;James M. Tiedje;James R. Cole

  21494
  Citations

• The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

  James R. Cole;Qiong Wang;E. Cardenas;Jordan A. Fish

  5580
  Citations

• Ribosomal Database Project: data and tools for high throughput rRNA analysis

  James R. Cole;Qiong Wang;Jordan A. Fish;Benli Chai

  4684
  Citations

• The RDP (Ribosomal Database Project) continues.

  Bonnie L. Maidak;James R. Cole;Timothy G. Lilburn;Charles T. Parker

  2190
  Citations

• The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

  James R. Cole;Benli Chai;Ryan J. Farris;Qiong Wang

  1783
  Citations

• The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy

  James R. Cole;Benli Chai;Terry L. Marsh;Ryan J. Farris

  1723
  Citations

• The minimum information about a genome sequence (MIGS) specification.

  Dawn Field;George Garrity;Tanya Gray;Norman Morrison

  1350
  Citations

• The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data.

  James R. Cole;Benli Chai;Ryan J. Farris;Qiong Wang

  1335
  Citations

• rrndb: the Ribosomal RNA Operon Copy Number Database

  Joel A. Klappenbach;Paul R. Saxman;James R. Cole;Thomas M. Schmidt

  1225
  Citations

• In-feed antibiotic effects on the swine intestinal microbiome.

  Torey Looft;Timothy A. Johnson;Heather K. Allen;Darrell O. Bayles

  1190
  Citations

• Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

  Marcus J. Claesson;Qiong Wang;Orla O'Sullivan;Rachel Greene-Diniz

  1094
  Citations

• A new version of the RDP (Ribosomal Database Project)

  Bonnie L. Maidak;James R. Cole;Charles T. Parker;George M. Garrity

  1029
  Citations

• Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

  Pelin Yilmaz;Pelin Yilmaz;Renzo Kottmann;Dawn Field;Rob Knight;Rob Knight

  810
  Citations

• ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes.

  Xiaole Yin;Xiao-Tao Jiang;Benli Chai;Liguan Li

  720
  Citations

• FunGene: the functional gene pipeline and repository

  Jordan A. Fish;Benli Chai;Qiong Wang;Yanni Sun

  621
  Citations

• The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level

  Luis M Rodriguez-R;Santosh Gunturu;William T Harvey;Ramon Rosselló-Mora

  563
  Citations

• Genome Project Standards in a New Era of Sequencing

  P. S. G. Chain;D. V. Grafham;R. S. Fulton;M. G. FitzGerald

  477
  Citations

• Characterization and Description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an Aryl-Halorespiring Facultative Anaerobic Myxobacterium

  Robert A. Sanford;James R. Cole;James M. Tiedje

  453
  Citations

• Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis.

  Terence L. Marsh;Paul Saxman;James Cole;James Tiedje

  439
  Citations

• Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming

  Kai Xue;Kai Xue;Mengting M. Yuan;Zhou J. Shi;Yujia Qin

  376
  Citations