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D-Index & Metrics

Computer Science

D-Index
74
Citations
51418
World Ranking
1440
National Ranking
748

Overview

James C. Gee is affiliated with the University of Pennsylvania in the United States. Their research primarily spans the field of Medicine with a focus on several subfields including Radiology, Nuclear Medicine and Imaging, Cognitive Neuroscience, Computer Vision and Pattern Recognition, Pulmonary and Respiratory Medicine, and Molecular Biology.

The scientist's work encompasses a variety of topics including Functional Brain Connectivity Studies, Radiomics and Machine Learning in Medical Imaging, Advanced Neuroimaging Techniques and Applications, Cell Image Analysis Techniques, Single-cell and Spatial Transcriptomics, Advanced MRI Techniques and Applications, and Alzheimer's Disease Research and Treatments.

Recent publications by James C. Gee include the following papers:

  • A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain, 2023, Nature
  • A multimodal cell census and atlas of the mammalian primary motor cortex, 2021, Nature
  • The ANTsX ecosystem for quantitative biological and medical imaging, 2021, Scientific Reports
  • Cellular anatomy of the mouse primary motor cortex, 2021, Nature
  • A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain, 2023, bioRxiv (Cold Spring Harbor Laboratory)

Co-authors with whom James C. Gee has frequently collaborated include:

  • Jeffrey Duda (30 joint works)
  • Philip A. Cook (27 joint works)
  • Corey T. McMillan (22 joint works)
  • Walter R. Witschey (21 joint works)
  • David J. Irwin (20 joint works)

The most common publication venues for James C. Gee are:

  • bioRxiv (Cold Spring Harbor Laboratory), 22 publications
  • arXiv (Cornell University), 20 publications
  • Alzheimer's & Dementia, 9 publications
  • Scientific Reports, 5 publications
  • NeuroImage Clinical, 4 publications

Best Publications

  • User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability

    Paul A. Yushkevich;Joseph Piven;Heather Cody Hazlett;Rachel Gimpel Smith

  • N4ITK: Improved N3 Bias Correction

    Nicholas J Tustison;Brian B Avants;Philip A Cook;Yuanjie Zheng

  • Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.

    Brian B. Avants;Charles L. Epstein;Murray Grossman;James C. Gee

  • A reproducible evaluation of ANTs similarity metric performance in brain image registration.

    Brian B. Avants;Nicholas J. Tustison;Gang Song;Philip A. Cook

  • Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.

    Arno Klein;Jesper L. R. Andersson;Babak A. Ardekani;Babak A. Ardekani;John Ashburner

  • Spatial transformations of diffusion tensor magnetic resonance images

    D.C. Alexander;C. Pierpaoli;P.J. Basser;J.C. Gee

  • Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements.

    Nicholas J. Tustison;Philip A. Cook;Arno Klein;Gang Song

  • The optimal template effect in hippocampus studies of diseased populations

    Brian B. Avants;Paul A. Yushkevich;John Pluta;David Minkoff

  • The Insight ToolKit image registration framework

    Brian B. Avants;Nicholas J. Tustison;Michael Stauffer;Gang Song

  • An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data

    Brian B. Avants;Nicholas J. Tustison;Jue Wu;Philip A. Cook

  • Deformable registration of diffusion tensor MR images with explicit orientation optimization.

    Hui Zhang;Paul A Yushkevich;Daniel C Alexander;James C Gee

  • Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge

    K. Murphy;B. van Ginneken;J. M. Reinhardt;S. Kabus

  • Geodesic estimation for large deformation anatomical shape averaging and interpolation

    Brian Avants;James C. Gee

  • Elastically deforming 3D atlas to match anatomical brain images.

    Jim C. Gee;Martin Reivich;Ruzena Bajcsy

  • Elastically Deforming a Three-Dimensional Atlas to Match Anatomical Brain Images

    James C Gee;Martin Reivich;Ruzena Bajcsy

  • On matching brain volumes

    James C. Gee

  • Neural basis for sentence comprehension: grammatical and short-term memory components.

    Ayanna Cooke;Edgar B. Zurif;Edgar B. Zurif;Christian DeVita;David Alsop

  • Evaluation of volume-based and surface-based brain image registration methods

    Arno Klein;Satrajit S. Ghosh;Brian Avants;B.T.T. Yeo

  • Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR

    Nicholas J. Tustison;K. L. Shrinidhi;Max Wintermark;Christopher R. Durst

  • Deformable registration of diffusion tensor MR images with explicit orientation optimization

    Hui Zhang;Paul A. Yushkevich;James C. Gee

  • A multimodal cell census and atlas of the mammalian primary motor cortex

    Ricky Adkins;Andrew Aldridge;Shona Allen

Frequent Co-Authors

Brian B. Avants
Brian B. Avants University of Virginia
Paul A. Yushkevich
Paul A. Yushkevich University of Pennsylvania
Murray Grossman
Murray Grossman University of Pennsylvania
Yuanjie Zheng
Yuanjie Zheng Shandong Normal University
Philip A. Cook
Philip A. Cook University of Pennsylvania
Corey T. McMillan
Corey T. McMillan University of Pennsylvania
Peachie Moore
Peachie Moore University of Pennsylvania
Daniel C. Alexander
Daniel C. Alexander University College London
Ruzena Bajcsy
Ruzena Bajcsy University of California, Berkeley
Tony J. Simon
Tony J. Simon University of California, Davis

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