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Frédérique Lisacek

Frédérique Lisacek

D-Index & Metrics

Computer Science

D-Index
38
Citations
19076
World Ranking
9936
National Ranking
176

Overview

Frédérique Lisacek is affiliated with the University of Geneva in Switzerland and has a body of work primarily in the fields of Biochemistry, Genetics, and Molecular Biology. Their research spans molecular biology, organic chemistry, spectroscopy, immunology, and cell biology, contributing significantly across these disciplines.

Their research focuses on key topics including glycosylation and glycoproteins, genomics and phylogenetic studies, carbohydrate chemistry and synthesis, advanced proteomics techniques, machine learning applications in bioinformatics, biomedical text mining, ontologies, and genetics and biomedical research.

Lisacek has published extensively in prominent scientific journals and venues. Frequent publication venues include PROTEOMICS with 19 works, bioRxiv from Cold Spring Harbor Laboratory with 9 papers, Glycobiology with 6, Nucleic Acids Research and Methods in Molecular Biology, each with 5 publications.

Recent papers authored or coauthored by Lisacek include:

  • Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users (2021) in Nucleic Acids Research
  • Glycosaminoglycans: What Remains To Be Deciphered? (2023) in JACS Au
  • Glycoinformatics in the Artificial Intelligence Era (2022) in Chemical Reviews
  • LectomeXplore, an update of UniLectin for the discovery of carbohydrate-binding proteins based on a new lectin classification (2020) in Nucleic Acids Research
  • LectinOracle: A Generalizable Deep Learning Model for Lectin-Glycan Binding Prediction (2021) in Advanced Science

Frequent collaborators include Nicolle H. Packer, Daniel Kolarich, Naoyuki Taniguchi, Amos Bairoch, and Andrew J. Link, with collaboration counts between 19 and 24 joint works each.

Best Publications

  • pROC: an open-source package for R and S+ to analyze and compare ROC curves

    Xavier Arnaud Robin;Natacha Turck;Alexandre Hainard;Natalia Tiberti

  • Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users.

    Séverine Duvaud;Chiara Gabella;Frédérique Lisacek;Frédérique Lisacek;Heinz Stockinger

  • Updates to the Symbol Nomenclature for Glycans guidelines.

    Sriram Neelamegham;Kiyoko Aoki-Kinoshita;Evan Bolton;Martin Frank

  • Processing strategies and software solutions for data‐independent acquisition in mass spectrometry

    Aivett Bilbao;Aivett Bilbao;Emmanuel Varesio;Jeremy Luban;Caterina Strambio-De-Castillia

  • The Use of Variable Q1 Isolation Windows Improves Selectivity in LC–SWATH–MS Acquisition

    Ying Zhang;Aivett Bilbao;Aivett Bilbao;Tobias Bruderer;Jeremy Luban

  • UniCarb-DB

    Catherine A. Hayes;Niclas G. Karlsson;Weston B. Struwe;Frederique Lisacek

  • UniCarbKB: building a knowledge platform for glycoproteomics.

    Matthew P. Campbell;Robyn A. Peterson;Julien Mariethoz;Elisabeth Gasteiger

  • GlyTouCan: an accessible glycan structure repository.

    Michael Tiemeyer;Kazuhiro Aoki;James Paulson;Richard D Cummings

  • GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical.

    Davide Alocci;Julien Mariethoz;Julien Mariethoz;Alessandra Gastaldello;Alessandra Gastaldello;Elisabeth Gasteiger

  • Deciphering the human nucleolar proteome.

    Yohann Couté;Jennifer A. Burgess;Jean-Jacques Diaz;Christine Chichester

  • Unrestricted identification of modified proteins using MS/MS.

    Erik Ahrné;Markus Müller;Frederique Lisacek

  • UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands

    François Bonnardel;Julien Mariethoz;Sebastian Salentin;Xavier Robin

  • Towards a standardized bioinformatics infrastructure for N- and O-glycomics

    Miguel A. Rojas-Macias;Julien Mariethoz;Julien Mariethoz;Peter Andersson;Chunsheng Jin

  • X-Rank: A Robust Algorithm for Small Molecule Identification Using Tandem Mass Spectrometry

    Roman Mylonas;Yann Mauron;Alexandre Masselot;Pierre-Alain Binz

  • EasyProt — An easy-to-use graphical platform for proteomics data analysis

    Florent Gluck;Christine Hoogland;Christine Hoogland;Paola Antinori;Xavier Robin

  • Toolboxes for a standardised and systematic study of glycans

    Matthew P. Campbell;René Ranzinger;Thomas Lütteke;Julien Mariethoz

  • Bioinformatics for protein biomarker panel classification: what is needed to bring biomarker panels into in vitro diagnostics?

    Xavier Arnaud Robin;Natacha Turck;Alexandre Hainard;Frédérique Lisacek

  • Automatic Identification of Group I Intron Cores in Genomic DNA Sequences

    Frédérique Lisacek;Yolande Diaz;François Michel

  • UniCarbKB: Putting the pieces together for glycomics research

    Matthew P. Campbell;Catherine A. Hayes;Weston B. Struwe;Marc R. Wilkins

  • Glycomics@ExPASy: Bridging the Gap.

    Julien Mariethoz;Davide Alocci;Davide Alocci;Alessandra Gastaldello;Alessandra Gastaldello;Oliver Horlacher

  • Using argumentation to retrieve articles with similar citations: an inquiry into improving related articles search in the MEDLINE digital library.

    Imad Tbahriti;Christine Chichester;Frédérique Lisacek;Patrick Ruch

  • Norine: Update of the Nonribosomal Peptide Resource

    Areski Flissi;Emma Ricart;Emma Ricart;Clémentine Campart;Mickael Chevalier

  • Algorithms on Strings, Trees and Sequences: Dan Gusfield.

    Frederique Lisacek

Frequent Co-Authors

Nicolle H. Packer
Nicolle H. Packer Macquarie University
Ron D. Appel
Ron D. Appel Swiss Institute of Bioinformatics
Jean-Charles Sanchez
Jean-Charles Sanchez University of Geneva
Kiyoko F. Aoki-Kinoshita
Kiyoko F. Aoki-Kinoshita Soka University of America
Anne Imberty
Anne Imberty Grenoble Alpes University
Daniel Kolarich
Daniel Kolarich Griffith University
Elisabeth Gasteiger
Elisabeth Gasteiger Swiss Institute of Bioinformatics
Amos Marc Bairoch
Amos Marc Bairoch Swiss Institute of Bioinformatics
Michael J. Dunn
Michael J. Dunn University College Dublin
Jeremy Luban
Jeremy Luban University of Massachusetts Chan Medical School

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