Candice N. Hirsch

Best Publications

• De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes

  Matthew B. Hufford;Arun S. Seetharam;Margaret R. Woodhouse;Kapeel M. Chougule

  691
  Citations

• Insights into the Maize Pan-Genome and Pan-Transcriptome

  Candice N. Hirsch;Candice N. Hirsch;Jillian M. Foerster;James M. Johnson;Rajandeep S. Sekhon;Rajandeep S. Sekhon

  615
  Citations

• Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress

  Irina Makarevitch;Amanda J. Waters;Patrick T. West;Michelle Stitzer

  499
  Citations

• An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development

  Scott C. Stelpflug;Rajandeep S. Sekhon;Brieanne Vaillancourt;Candice N. Hirsch

  391
  Citations

• Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing

  Timothy Mathes Beissinger;Candice N. Hirsch;Candice N. Hirsch;Rajandeep S. Sekhon;Rajandeep S. Sekhon;Jillian M. Foerster

  237
  Citations

• Retrospective View of North American Potato (Solanum tuberosum L.) Breeding in the 20th and 21st Centuries

  Candice N. Hirsch;Cory D. Hirsch;Kimberly Felcher;Joseph Coombs

  236
  Citations

• How the pan-genome is changing crop genomics and improvement

  Unknown

  234
  Citations

• RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome

  Qing Li;Jonathan I. Gent;Greg Zynda;Jawon Song

  229
  Citations

• Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize

  Candice N. Hirsch;Cory D. Hirsch;Alex B. Brohammer;Megan J. Bowman

  204
  Citations

• Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays.

  Rajandeep S. Sekhon;Rajandeep S. Sekhon;Roman Briskine;Candice N. Hirsch;Candice N. Hirsch;Chad L. Myers

  182
  Citations

• The effect of artificial selection on phenotypic plasticity in maize.

  Joseph L. Gage;Diego Jarquin;Cinta Romay;Aaron Lorenz

  156
  Citations

• Natural variation for gene expression responses to abiotic stress in maize.

  Amanda J. Waters;Irina Makarevitch;Jaclyn Noshay;Liana T. Burghardt

  137
  Citations

• Spud DB: A resource for mining sequences, genotypes, and phenotypes to accelerate potato breeding

  Cory D. Hirsch;John P. Hamilton;Kevin L. Childs;Jason Cepela

  125
  Citations

• Transposable elements contribute to dynamic genome content in maize.

  Sarah N. Anderson;Michelle C. Stitzer;Alex B. Brohammer;Peng Zhou

  122
  Citations

• Genome-wide association analysis of stalk biomass and anatomical traits in maize

  Mona Mazaheri;Mona Mazaheri;Marlies Heckwolf;Marlies Heckwolf;Brieanne Vaillancourt;Brieanne Vaillancourt;Joseph L. Gage

  119
  Citations

• Whole transcriptome profiling of maize during early somatic embryogenesis reveals altered expression of stress factors and embryogenesis-related genes.

  Stella A. G. D. Salvo;Candice N. Hirsch;C. Robin Buell;Shawn M. Kaeppler

  114
  Citations

• QTL mapping and phenotypic variation for root architectural traits in maize (Zea mays L.)

  Amy L. Burton;James M. Johnson;Jillian M. Foerster;Candice N. Hirsch

  106
  Citations

• Dynamic Patterns of Gene Expression Additivity and Regulatory Variation throughout Maize Development.

  Peng Zhou;Candice N. Hirsch;Steven P. Briggs;Nathan M. Springer

  103
  Citations

• The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment.

  Anna R. Rogers;Jeffrey C. Dunne;Cinta Romay;Martin Bohn

  95
  Citations

• Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress.

  Irina Makarevitch;Amanda J. Waters;Patrick T. West;Michelle Stitzer

  71
  Citations