Asa Ben-Hur

Best Publications

• Support vector clustering

  Asa Ben-Hur;David Horn;Hava T. Siegelmann;Vladimir Vapnik

  2032
  Citations

• A User's Guide to Support Vector Machines

  Asa Ben-Hur;Jason Weston

  1218
  Citations

• A large-scale evaluation of computational protein function prediction

  Predrag Radivojac;Wyatt T Clark;Tal Ronnen Oron;Alexandra M Schnoes

  1191
  Citations

• Kernel methods for predicting protein--protein interactions

  Asa Ben-Hur;William Stafford Noble

  824
  Citations

• A stability based method for discovering structure in clustered data.

  Asa Ben-Hur;Andre Elisseeff;Isabelle Guyon

  821
  Citations

• Support vector machines and kernels for computational biology.

  Asa Ben-Hur;Cheng Soon Ong;Sören Sonnenburg;Bernhard Schölkopf

  816
  Citations

• Result Analysis of the NIPS 2003 Feature Selection Challenge

  Isabelle Guyon;Steve Gunn;Asa Ben-Hur;Gideon Dror

  742
  Citations

• Protein Interface Prediction using Graph Convolutional Networks

  Alex Fout;Jonathon Byrd;Basir Shariat;Asa Ben-Hur

  600
  Citations

• A survey of the sorghum transcriptome using single-molecule long reads

  Salah E. Abdel-Ghany;Michael Hamilton;Jennifer L. Jacobi;Peter Ngam

  590
  Citations

• An expanded evaluation of protein function prediction methods shows an improvement in accuracy

  Yuxiang Jiang;Tal Ronnen Oron;Wyatt T. Clark;Asma R. Bankapur

  453
  Citations

• The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

  Naihui Zhou;Yuxiang Jiang;Timothy R. Bergquist;Alexandra J. Lee

  449
  Citations

• Large-scale identification of yeast integral membrane protein interactions

  John P. Miller;Russell S. Lo;Asa Ben-Hur;Cynthia Desmarais

  347
  Citations

• Genotypic predictors of human immunodeficiency virus type 1 drug resistance

  Soo-Yon Rhee;Jonathan Taylor;Gauhar Wadhera;Asa Ben-Hur

  346
  Citations

• RAMClust: a novel feature clustering method enables spectral-matching-based annotation for metabolomics data.

  C. D. Broeckling;F. A. Afsar;F. A. Afsar;S. Neumann;A. Ben-Hur

  318
  Citations

• Detecting stable clusters using principal component analysis.

  Asa Ben-Hur;Isabelle Guyon

  306
  Citations

• An expanded evaluation of protein function prediction methods shows an improvement in accuracy

  Yuxiang Jiang;Tal Ronnen Oron;Wyatt T Clark;Asma R Bankapur

  302
  Citations

• Choosing negative examples for the prediction of protein-protein interactions

  Asa Ben-Hur;Asa Ben-Hur;William Stafford Noble

  284
  Citations

• Remote homology detection: a motif based approach.

  Asa Ben-Hur;Douglas L. Brutlag

  251
  Citations

• A support vector clustering method

  A. Ben-Hur;D. Horn;H.T. Siegelmann;V. Vapnik

  179
  Citations

• SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data

  Mark F Rogers;Julie Thomas;Anireddy Sn Reddy;Asa Ben-Hur

  167
  Citations

• Additional file 1 of An expanded evaluation of protein function prediction methods shows an improvement in accuracy

  Yuxiang Jiang;Tal Ronnen Oron;Wyatt T. Clark;Asma R. Bankapur

  1
  Citations