World's Best Scientists 2026 revealed!

Overview

Andreas Prlić is affiliated with Invitae in the United States. Their research primarily spans the field of Biochemistry, Genetics and Molecular Biology, with a focus on subfields such as Molecular Biology, Cancer Research, Artificial Intelligence, Information Systems and Management, and Genetics.

Their recent publications include the following:

  • Pre-calculated protein structure alignments at the RCSB PDB website: Fig. 1., 2020, UNC Libraries
  • SeqRepo: A system for managing local collections of biological sequences, 2020, PLoS ONE
  • SeqRepo: A system for managing local collections biological sequences, 2020, bioRxiv (Cold Spring Harbor Laboratory)
  • Development and application of a computable genotype model in the GA4GH Variation Representation Specification, 2022, bioRxiv (Cold Spring Harbor Laboratory)

Frequent coauthors working alongside Andreas Prlić include:

  • Reece K. Hart
  • Wesley Goar
  • Lawrence Babb
  • Srikar Chamala
  • Melissa Cline

Their work has been published most often in these venues:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • PLoS ONE
  • UNC Libraries

Recurring research topics in their publications comprise:

  • Genomics and Phylogenetic Studies
  • Gene expression and cancer classification
  • Algorithms and Data Compression
  • Scientific Computing and Data Management
  • Genomics and Rare Diseases
  • Biomedical Text Mining and Ontologies
  • Cancer Genomics and Diagnostics

Best Publications

  • The RCSB protein data bank: integrative view of protein, gene and 3D structural information

    Peter W. Rose;Andreas Prlić;Ali Altunkaya;Chunxiao Bi

  • Recon3D enables a three-dimensional view of gene variation in human metabolism.

    Elizabeth Brunk;Elizabeth Brunk;Swagatika Sahoo;Daniel C. Zielinski;Ali Altunkaya;Ali Altunkaya

  • The RCSB Protein Data Bank: redesigned web site and web services

    Peter W. Rose;Bojan Beran;Chunxiao Bi;Wolfgang F. Bluhm

  • The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

    Peter W. Rose;Andreas Prlić;Chunxiao Bi;Wolfgang F. Bluhm

  • The RCSB Protein Data Bank: new resources for research and education

    Peter W. Rose;Chunxiao Bi;Wolfgang F. Bluhm;Cole H. Christie

  • NGL viewer: web-based molecular graphics for large complexes.

    Alexander S Rose;Anthony R Bradley;Yana Valasatava;Jose M Duarte

  • BioJava: an open-source framework for bioinformatics

    Richard C. G. Holland;Thomas A. Down;Matthew R. Pocock;Andreas Prlic

  • GA4GH: International policies and standards for data sharing across genomic research and healthcare

    Heidi L. Rehm;Heidi L. Rehm;Angela J.H. Page;Lindsay Smith;Jeremy B. Adams

  • Pre-calculated protein structure alignments at the RCSB PDB website

    Andreas Prlić;Spencer Bliven;Peter W. Rose;Wolfgang F. Bluhm

  • BioJava: an open-source framework for bioinformatics in 2012

    Andreas Prlic;Andrew D. Yates;Spencer Bliven;Peter W. Rose

  • Ten Simple Rules for the Open Development of Scientific Software

    Andreas Prlić;James B. Procter

  • Structure-derived substitution matrices for alignment of distantly related sequences

    Andreas Prlić;Francisco S. Domingues;Manfred J. Sippl

  • Integrating biological data - the Distributed Annotation System

    Andrew M. Jenkinson;Mario Albrecht;Ewan Birney;Hagen Blankenburg

  • Web-based molecular graphics for large complexes

    Alexander S. Rose;Anthony R. Bradley;Yana Valasatava;Jose M. Duarte

  • SISYPHUS—structural alignments for proteins with non-trivial relationships

    Antonina Andreeva;Andreas Prlić;Tim J. P. Hubbard;Alexey G. Murzin

  • Trendspotting in the Protein Data Bank.

    Helen M. Berman;Buvaneswari Coimbatore Narayanan;Luigi Di Costanzo;Shuchismita Dutta

  • Integrating sequence and structural biology with DAS.

    Andreas Prlic;Thomas Alexander Down;Eugene Kulesha;Robert D Finn

  • Assessment of the CASP4 fold recognition category

    Manfred J. Sippl;Peter Lackner;Francisco S. Domingues;Andreas Prlić

  • Adding Some SPICE to DAS

    Andreas Prlić;Thomas A. Down;Tim J. P. Hubbard

  • Circular Permutation in Proteins

    Spencer Bliven;Andreas Prlić

Frequent Co-Authors

Philip E. Bourne
Philip E. Bourne University of Virginia
Stephen K. Burley
Stephen K. Burley Rutgers, The State University of New Jersey
Helen M. Berman
Helen M. Berman Rutgers, The State University of New Jersey
David S. Goodsell
David S. Goodsell Rutgers, The State University of New Jersey
John D. Westbrook
John D. Westbrook Rutgers, The State University of New Jersey
Tim Hubbard
Tim Hubbard King's College London
Thomas A. Down
Thomas A. Down Wellcome/Cancer Research UK Gurdon Institute
Robert D. Finn
Robert D. Finn European Bioinformatics Institute
Jianjiong Gao
Jianjiong Gao Memorial Sloan Kettering Cancer Center
Henning Hermjakob
Henning Hermjakob European Bioinformatics Institute

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