World's Best Scientists 2026 revealed!

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Engineering and Technology

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76
Citations
57382
World Ranking
682
National Ranking
42

Biology and Biochemistry

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89
Citations
68402
World Ranking
2488
National Ranking
175

Overview

Alvis Brazma is affiliated with the European Bioinformatics Institute in the United Kingdom. Their research spans multiple areas within biochemistry, genetics, and molecular biology, with a particular focus on molecular biology.

The main fields of study for Brazma include:

  • Biochemistry, Genetics and Molecular Biology

Within these areas, Brazma's work covers several subfields:

  • Molecular Biology
  • Infectious Diseases
  • Biophysics
  • Spectroscopy
  • Cancer Research

The scientist's research topics highlight their involvement in cutting-edge techniques and relevant biomedical challenges:

  • Single-cell and spatial transcriptomics
  • Gene expression and cancer classification
  • Cell Image Analysis Techniques
  • Molecular Biology Techniques and Applications
  • Advanced Proteomics Techniques and Applications
  • SARS-CoV-2 and COVID-19 Research
  • Genomics and Phylogenetic Studies

Some of Brazma's recent papers include:

  • "The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences", 2021, Nucleic Acids Research
  • "SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues", 2020, Cell
  • "Transparency and reproducibility in artificial intelligence", 2020, Nature
  • "Expression Atlas update: gene and protein expression in multiple species", 2021, Nucleic Acids Research
  • "Putative cell type discovery from single-cell gene expression data", 2020, Nature Methods

Brazma frequently collaborates with several researchers, including:

  • Irene Papatheodorou
  • Zhichao Miao
  • Nuno A. Fonseca
  • Pablo Moreno
  • Manik Garg

The scientist's work has been published in various venues, with the most frequent being:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature Communications
  • Nucleic Acids Research
  • Faculty Opinions - Post-Publication Peer Review of the Biomedical Literature
  • Nature Methods

Best Publications

  • The PRIDE database and related tools and resources in 2019: improving support for quantification data.

    Yasset Perez-Riverol;Attila Csordas;Jingwen Bai;Manuel Bernal-Llinares

  • The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.

    Yasset Perez-Riverol;Jingwen Bai;Chakradhar Bandla;David García-Seisdedos

  • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

    Alvis Brazma;Pascal Hingamp;John Quackenbush;Gavin Sherlock

  • Pan-cancer analysis of whole genomes

    Peter J. Campbell;Gad Getz;Jan O. Korbel;Joshua M. Stuart

  • An integrated encyclopedia of DNA elements in the human genome

    Ian Dunham;Anshul Kundaje;Shelley F. Aldred;Patrick J. Collins

  • BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

    Steffen Durinck;Yves Moreau;Arek Kasprzyk;Sean Davis

  • SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues.

    Carly G.K. Ziegler;Samuel J. Allon;Sarah K. Nyquist;Ian M. Mbano

  • Transcriptome and genome sequencing uncovers functional variation in humans

    Tuuli Lappalainen;Michael Sammeth;Marc R. Friedländer;Peter A. C. ‘t Hoen

  • International network of cancer genome projects

    Thomas J. Hudson;Thomas J. Hudson;Warwick Anderson;Axel Aretz;Anna D. Barker

  • A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

    Richard M. Myers;John Stamatoyannopoulos;Michael Snyder;Ian Dunham

  • ArrayExpress—a public repository for microarray gene expression data at the EBI

    Helen E. Parkinson;Ugis Sarkans;Mohammadreza Shojatalab;Niran Abeygunawardena

  • Gene expression data analysis.

    Alvis Brazma;Jaak Vilo

  • GLOBAL TRANSCRIPTIONAL RESPONSES OF FISSION YEAST TO ENVIRONMENTAL STRESS

    Dongrong Chen;W. Mark Toone;Juan Mata;Rachel Lyne

  • Patterns of somatic structural variation in human cancer genomes

    Yilong Li;Nicola D Roberts;Jeremiah A Wala;Jeremiah A Wala;Ofer Shapira;Ofer Shapira

  • ArrayExpress—a public database of microarray experiments and gene expression profiles

    Helen E. Parkinson;Misha Kapushesky;Mohammadreza Shojatalab;Niran Abeygunawardena

  • ArrayExpress update—simplifying data submissions

    Nikolay Kolesnikov;Emma Hastings;Maria Keays;Olga Melnichuk

  • The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.

    Henning Hermjakob;Luisa Montecchi-Palazzi;Gary Bader;Jérôme Wojcik

  • Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants

    Robert Petryszak;Maria Keays;Y. Amy Tang;Nuno A. Fonseca

  • Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

    Chris F. Taylor;Chris F. Taylor;Dawn Field;Susanna Assunta Sansone;Susanna Assunta Sansone;Jan Aerts

  • Periodic gene expression program of the fission yeast cell cycle

    Gabriella Rustici;Juan Mata;Katja Kivinen;Pietro Lió

  • ArrayExpress update - from bulk to single-cell expression data.

    Awais Athar;Anja Füllgrabe;Nancy George;Haider Iqbal

  • ArrayExpress - a public repository for microarray gene expression data at the EBI

    Unknown

Frequent Co-Authors

Ugis Sarkans
Ugis Sarkans European Bioinformatics Institute
Helen Parkinson
Helen Parkinson European Bioinformatics Institute
John Quackenbush
John Quackenbush Harvard University
Jaak Vilo
Jaak Vilo University of Tartu
John C. Marioni
John C. Marioni European Bioinformatics Institute
Oliver Stegle
Oliver Stegle German Cancer Research Center
Gavin Sherlock
Gavin Sherlock Stanford University
Esko Ukkonen
Esko Ukkonen University of Helsinki
Christian J. Stoeckert
Christian J. Stoeckert University of Pennsylvania
Paul Flicek
Paul Flicek The Jackson Laboratory

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