World's Best Scientists 2026 revealed!

D-Index & Metrics

Genetics

D-Index
92
Citations
50879
World Ranking
987
National Ranking
486

Research.com Recognitions

  • 2018 - Member of the National Academy of Sciences
  • 2018 - Fellow of the American Mathematical Society For contributions to population genetics and computational biology, and for service to the profession.
  • 2011 - Fellow of the Royal Society, United Kingdom
  • 2004 - Fellow of the American Statistical Association (ASA)
  • 1998 - Fellow of the American Association for the Advancement of Science (AAAS)
  • Fellow of The Academy of Medical Sciences, United Kingdom
  • Member of the European Molecular Biology Organization (EMBO)
  • Fellow of The Academy of Medical Sciences, United Kingdom
  • Member of the European Molecular Biology Organization (EMBO)

Overview

Simon Tavaré is affiliated with Columbia University in the United States. Their research spans multiple fields, with notable contributions in Biochemistry, Genetics and Molecular Biology, Mathematics, and Medicine. Their work is particularly concentrated in the subfields of Molecular Biology, Artificial Intelligence, Cancer Research, Statistics and Probability, and Mathematical Physics.

The scientist's research topics include Cancer Genomics and Diagnostics, Bayesian Methods and Mixture Models, Single-cell and Spatial Transcriptomics, Stochastic Processes and Statistical Mechanics, Cell Image Analysis Techniques, Esophageal Cancer Research and Treatment, and Markov Chains and Monte Carlo Methods.

Simon Tavaré has published extensively in various scientific venues. Frequent publication outlets include arXiv (Cornell University), Nature Communications, bioRxiv (Cold Spring Harbor Laboratory), Nature, and Cancer Discovery.

Recent papers authored or co-authored by Simon Tavaré include:

  • Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer (2020, Nature Cancer)
  • Clonal fitness inferred from time-series modelling of single-cell cancer genomes (2021, Nature)
  • Identification of Subtypes of Barrett's Esophagus and Esophageal Adenocarcinoma Based on DNA Methylation Profiles and Integration of Transcriptome and Genome Data (2020, Gastroenterology)
  • Single-Cell RNA Sequencing Unifies Developmental Programs of Esophageal and Gastric Intestinal Metaplasia (2023, Cancer Discovery)
  • Machine learning to predict early recurrence after oesophageal cancer surgery (2020, British journal of surgery)

Frequent co-authors working alongside Simon Tavaré include:

  • Samuel Aparício
  • Ignacio Vázquez-Garćıa
  • Khanh N. Dinh
  • Rebecca C. Fitzgerald
  • Ginny Devonshire

Simon Tavaré's contributions have been recognized by several professional societies and organizations. Their awards and honors include:

  • Fellow of the American Mathematical Society (2018) for contributions to population genetics and computational biology, and service to the profession
  • Member of the National Academy of Sciences (2018)
  • Fellow of the Royal Society, United Kingdom (2011)
  • Fellow of the American Statistical Association (ASA) (2004)
  • Fellow of the American Association for the Advancement of Science (AAAS) (1998)
  • Fellow of The Academy of Medical Sciences, United Kingdom
  • Member of the European Molecular Biology Organization (EMBO)

Best Publications

  • The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

    Christina Curtis;Christina Curtis;Sohrab P Shah;Suet-Feung Chin;Gulisa Turashvili

  • Some probabilistic and statistical problems in the analysis of DNA sequences

    Simon Tavaré

  • Pan-cancer analysis of whole genomes

    Peter J. Campbell;Gad Getz;Jan O. Korbel;Joshua M. Stuart

  • Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes

    Barbara E. Stranger;Matthew S. Forrest;Mark Dunning;Catherine E. Ingle

  • Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics

    Andrea Sottoriva;Andrea Sottoriva;Andrea Sottoriva;Inmaculada Spiteri;Sara G. M. Piccirillo;Anestis Touloumis

  • Population genomics of human gene expression

    Barbara E. Stranger;Alexandra C. Nica;Matthew S. Forrest;Antigone Dimas

  • MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype

    Cherie Blenkiron;Leonard D Goldstein;Natalie P Thorne;Inmaculada Spiteri

  • Inferring Coalescence Times From DNA Sequence Data

    Simon Tavare;David J Balding;Robert C Griffiths;Peter Donnelly

  • Autophagy mediates the mitotic senescence transition

    Andrew R.J. Young;Masako Narita;Manuela Ferreira;Kristina Kirschner

  • Patterns of somatic structural variation in human cancer genomes

    Yilong Li;Nicola D Roberts;Jeremiah A Wala;Jeremiah A Wala;Ofer Shapira;Ofer Shapira

  • A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

    Thomas A. Down;Vardhman K. Rakyan;Daniel J. Turner;Paul Flicek

  • Line-of-descent and genealogical processes, and their applications in population genetics models

    Simon Tavaré

  • Genome-Wide Associations of Gene Expression Variation in Humans

    Barbara E Stranger;Matthew S Forrest;Andrew G Clark;Andrew G Clark;Mark J Minichiello

  • Linkage disequilibrium: what history has to tell us.

    Magnus Nordborg;Simon Tavaré

  • Spatial Coupling of mTOR and Autophagy Augments Secretory Phenotypes

    Masako Narita;Andrew R. J. Young;Satoko Arakawa;Shamith A. Samarajiwa

  • beadarray: R classes and methods for Illumina bead-based data.

    Mark J. Dunning;Mike L. Smith;Matthew E. Ritchie;Simon Tavaré

  • Piwi and piRNAs Act Upstream of an Endogenous siRNA Pathway to Suppress Tc3 Transposon Mobility in the Caenorhabditis elegans Germline

    Partha P. Das;Partha P. Das;Partha P. Das;Marloes P. Bagijn;Marloes P. Bagijn;Leonard D. Goldstein;Julie R. Woolford;Julie R. Woolford

  • Similar gene expression patterns characterize aging and oxidative stress in Drosophila melanogaster

    Gary N. Landis;Diana Abdueva;Dmitriy Skvortsov;Junsheng Yang

  • Coalescents and Genealogical Structure Under Neutrality

    Peter Donnelly;Simon Tavare

  • Ancestral Inference in Population Genetics

    R. C. Griffiths;Simon Tavare

Frequent Co-Authors

John C. Marioni
John C. Marioni European Bioinformatics Institute
Richard Arratia
Richard Arratia University of Southern California
Carlos Caldas
Carlos Caldas University of Cambridge
Rebecca C. Fitzgerald
Rebecca C. Fitzgerald University of Cambridge
Christina Curtis
Christina Curtis Stanford University
Nuno L. Barbosa-Morais
Nuno L. Barbosa-Morais University of Lisbon
Paul A.W. Edwards
Paul A.W. Edwards University of Cambridge
Robert C. Griffiths
Robert C. Griffiths Monash University
Colin Watts
Colin Watts University of Birmingham
John Tower
John Tower University of Southern California

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