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Sampo Pyysalo

D-Index & Metrics

Discipline name D-Index World Ranking Current World Ranking National Ranking Current National Ranking Publications Citations
Computer Science 55 4176 4059 24 21 164 32036

Sampo Pyysalo publications per year

The chart shows the history of publications by Sampo Pyysalo between 2004 and 2025, highlighting the no. of papers published in each year and offering an overview of the publication velocity of this scholar. Sampo Pyysalo published across 22 years, from 2004 to 2025, averaging 8.8 papers a year. Output peaked at 21 publications in 2011. 24 of the 193 publications appeared in the last two years.

No. of publications
5 10 15 20
Bar chart. Horizontal axis: year, 2004 to 2025. Vertical axis: number of publications, 0 to 21. Peak 21 publications in 2011. 2004: 3 publications 2005: 3 publications 2006: 7 publications 2007: 3 publications 2008: 4 publications 2009: 8 publications 2010: 14 publications 2011: 21 publications 2012: 12 publications 2013: 8 publications 2014: 2 publications 2015: 10 publications 2016: 9 publications 2017: 9 publications 2018: 4 publications 2019: 9 publications 2020: 11 publications 2021: 10 publications 2022: 8 publications 2023: 14 publications 2024: 16 publications 2025: 8 publications
2004 2025

193 publications in total across all disciplines

View publications per year as a table
Sampo Pyysalo: publications per year, 2004 to 2025
Year Publications
2004 3
2005 3
2006 7
2007 3
2008 4
2009 8
2010 14
2011 21
2012 12
2013 8
2014 2
2015 10
2016 9
2017 9
2018 4
2019 9
2020 11
2021 10
2022 8
2023 14
2024 16
2025 8
Total 193
Download as CSV

Sampo Pyysalo publication distribution in Computer Science in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Computer Science in 2026. The highlighted bar marks where Sampo Pyysalo sits on this spectrum.

No. of scientists
200 400 600
Bar chart with 97 bars. Horizontal axis: publications, 32–41 to 991+. Vertical axis: number of scientists, 0 to 609. Most scientists, 609, have 142–151 publications. The last bar groups every scientist with 991 publications or more. The highlighted bar, 162–171 publications, is where this scientist sits. 32–41 publications: 7 scientists 42–51 publications: 22 scientists 52–61 publications: 82 scientists 62–71 publications: 134 scientists 72–81 publications: 249 scientists 82–91 publications: 324 scientists 92–101 publications: 421 scientists 102–111 publications: 420 scientists 112–121 publications: 497 scientists 122–131 publications: 544 scientists 132–141 publications: 555 scientists 142–151 publications: 609 scientists 152–161 publications: 559 scientists 162–171 publications: 534 scientists 172–181 publications: 556 scientists 182–191 publications: 583 scientists 192–201 publications: 519 scientists 202–211 publications: 508 scientists 212–221 publications: 490 scientists 222–231 publications: 437 scientists 232–241 publications: 423 scientists 242–251 publications: 408 scientists 252–261 publications: 377 scientists 262–271 publications: 301 scientists 272–281 publications: 335 scientists 282–291 publications: 320 scientists 292–301 publications: 293 scientists 302–311 publications: 250 scientists 312–321 publications: 238 scientists 322–331 publications: 206 scientists 332–341 publications: 209 scientists 342–351 publications: 208 scientists 352–361 publications: 162 scientists 362–371 publications: 176 scientists 372–381 publications: 127 scientists 382–391 publications: 158 scientists 392–401 publications: 128 scientists 402–411 publications: 104 scientists 412–421 publications: 94 scientists 422–431 publications: 99 scientists 432–441 publications: 83 scientists 442–451 publications: 108 scientists 452–461 publications: 73 scientists 462–471 publications: 77 scientists 472–481 publications: 69 scientists 482–491 publications: 84 scientists 492–501 publications: 62 scientists 502–511 publications: 54 scientists 512–521 publications: 57 scientists 522–531 publications: 51 scientists 532–541 publications: 51 scientists 542–551 publications: 32 scientists 552–561 publications: 38 scientists 562–571 publications: 28 scientists 572–581 publications: 43 scientists 582–591 publications: 33 scientists 592–601 publications: 41 scientists 602–611 publications: 32 scientists 612–621 publications: 28 scientists 622–631 publications: 25 scientists 632–641 publications: 27 scientists 642–651 publications: 17 scientists 652–661 publications: 20 scientists 662–671 publications: 17 scientists 672–681 publications: 15 scientists 682–691 publications: 14 scientists 692–701 publications: 21 scientists 702–711 publications: 13 scientists 712–721 publications: 12 scientists 722–731 publications: 19 scientists 732–741 publications: 14 scientists 742–751 publications: 12 scientists 752–761 publications: 10 scientists 762–771 publications: 10 scientists 772–781 publications: 11 scientists 782–791 publications: 10 scientists 792–801 publications: 11 scientists 802–811 publications: 8 scientists 812–821 publications: 8 scientists 822–831 publications: 7 scientists 832–841 publications: 11 scientists 842–851 publications: 10 scientists 852–861 publications: 5 scientists 862–871 publications: 9 scientists 872–881 publications: 4 scientists 882–891 publications: 6 scientists 892–901 publications: 3 scientists 902–911 publications: 6 scientists 912–921 publications: 3 scientists 922–931 publications: 2 scientists 932–941 publications: 2 scientists 942–951 publications: 2 scientists 952–961 publications: 3 scientists 962–971 publications: 3 scientists 972–981 publications: 3 scientists 982–990 publications: 5 scientists 991+ publications: 100 scientists
32–41 publications 991+

This scientist: 164 publications — 32nd percentile

32% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 991 publications or more.

View publications distribution as a table
Number of Computer Science scientists by publication count, Research.com 2026 ranking edition. Based on 14,188 ranked scientists.
Publications Scientists This scientist
32–41 7
42–51 22
52–61 82
62–71 134
72–81 249
82–91 324
92–101 421
102–111 420
112–121 497
122–131 544
132–141 555
142–151 609
152–161 559
162–171 534 164
172–181 556
182–191 583
192–201 519
202–211 508
212–221 490
222–231 437
232–241 423
242–251 408
252–261 377
262–271 301
272–281 335
282–291 320
292–301 293
302–311 250
312–321 238
322–331 206
332–341 209
342–351 208
352–361 162
362–371 176
372–381 127
382–391 158
392–401 128
402–411 104
412–421 94
422–431 99
432–441 83
442–451 108
452–461 73
462–471 77
472–481 69
482–491 84
492–501 62
502–511 54
512–521 57
522–531 51
532–541 51
542–551 32
552–561 38
562–571 28
572–581 43
582–591 33
592–601 41
602–611 32
612–621 28
622–631 25
632–641 27
642–651 17
652–661 20
662–671 17
672–681 15
682–691 14
692–701 21
702–711 13
712–721 12
722–731 19
732–741 14
742–751 12
752–761 10
762–771 10
772–781 11
782–791 10
792–801 11
802–811 8
812–821 8
822–831 7
832–841 11
842–851 10
852–861 5
862–871 9
872–881 4
882–891 6
892–901 3
902–911 6
912–921 3
922–931 2
932–941 2
942–951 2
952–961 3
962–971 3
972–981 3
982–990 5
991+ 100
Download as CSV

Sampo Pyysalo D-index placement in Computer Science in 2026

The chart shows the D-index (discipline H-index) distribution of Computer Science scientists ranked by Research.com in 2026. The highlighted bar marks where Sampo Pyysalo sits on this spectrum.

No. of scientists
200 400 600 800
Bar chart with 52 bars. Horizontal axis: D-Index, 30–31 to 131+. Vertical axis: number of scientists, 0 to 990. Most scientists, 990, have 36–37 D-Index. The last bar groups every scientist with 131 D-Index or more. The highlighted bar, 54–55 D-Index, is where this scientist sits. 30–31 D-Index: 879 scientists 32–33 D-Index: 983 scientists 34–35 D-Index: 918 scientists 36–37 D-Index: 990 scientists 38–39 D-Index: 968 scientists 40–41 D-Index: 907 scientists 42–43 D-Index: 821 scientists 44–45 D-Index: 763 scientists 46–47 D-Index: 689 scientists 48–49 D-Index: 543 scientists 50–51 D-Index: 543 scientists 52–53 D-Index: 518 scientists 54–55 D-Index: 500 scientists 56–57 D-Index: 458 scientists 58–59 D-Index: 400 scientists 60–61 D-Index: 337 scientists 62–63 D-Index: 308 scientists 64–65 D-Index: 292 scientists 66–67 D-Index: 249 scientists 68–69 D-Index: 213 scientists 70–71 D-Index: 192 scientists 72–73 D-Index: 189 scientists 74–75 D-Index: 165 scientists 76–77 D-Index: 139 scientists 78–79 D-Index: 119 scientists 80–81 D-Index: 121 scientists 82–83 D-Index: 113 scientists 84–85 D-Index: 88 scientists 86–87 D-Index: 87 scientists 88–89 D-Index: 75 scientists 90–91 D-Index: 69 scientists 92–93 D-Index: 57 scientists 94–95 D-Index: 46 scientists 96–97 D-Index: 38 scientists 98–99 D-Index: 34 scientists 100–101 D-Index: 36 scientists 102–103 D-Index: 27 scientists 104–105 D-Index: 37 scientists 106–107 D-Index: 18 scientists 108–109 D-Index: 31 scientists 110–111 D-Index: 19 scientists 112–113 D-Index: 16 scientists 114–115 D-Index: 12 scientists 116–117 D-Index: 20 scientists 118–119 D-Index: 15 scientists 120–121 D-Index: 5 scientists 122–123 D-Index: 20 scientists 124–125 D-Index: 8 scientists 126–127 D-Index: 5 scientists 128–129 D-Index: 7 scientists 130 D-Index: 3 scientists 131+ D-Index: 98 scientists
30–31 D-Index 131+

This scientist: 55 D-Index — 71st percentile

71% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 131 D-Index or more.

View D-Index distribution as a table
Number of Computer Science scientists by D-index, Research.com 2026 ranking edition. Based on 14,188 ranked scientists.
D-Index Scientists This scientist
30–31 879
32–33 983
34–35 918
36–37 990
38–39 968
40–41 907
42–43 821
44–45 763
46–47 689
48–49 543
50–51 543
52–53 518
54–55 500 55
56–57 458
58–59 400
60–61 337
62–63 308
64–65 292
66–67 249
68–69 213
70–71 192
72–73 189
74–75 165
76–77 139
78–79 119
80–81 121
82–83 113
84–85 88
86–87 87
88–89 75
90–91 69
92–93 57
94–95 46
96–97 38
98–99 34
100–101 36
102–103 27
104–105 37
106–107 18
108–109 31
110–111 19
112–113 16
114–115 12
116–117 20
118–119 15
120–121 5
122–123 20
124–125 8
126–127 5
128–129 7
130 3
131+ 98
Download as CSV

Overview

Sampo Pyysalo is affiliated with the University of Turku in Finland. Their research spans several interdisciplinary fields, with a focus on computational methods related to biology and language processing.

Their primary fields of study include:

  • Computer Science
  • Biochemistry, Genetics and Molecular Biology

Within these fields, Pyysalo has contributed extensively to subfields such as:

  • Artificial Intelligence
  • Molecular Biology
  • Spectroscopy
  • Computational Theory and Mathematics
  • Information Systems

The main research topics addressed by Pyysalo encompass:

  • Topic Modeling
  • Natural Language Processing Techniques
  • Biomedical Text Mining and Ontologies
  • Bioinformatics and Genomic Networks
  • Text Readability and Simplification
  • Semantic Web and Ontologies
  • Advanced Proteomics Techniques and Applications

Among Pyysalo's frequent co-authors are:

  • Katerina Nastou
  • Lars Juhl Jensen
  • Farrokh Mehryary
  • Filip Ginter
  • Jouni Luoma

Pyysalo has published in a variety of scientific venues. The most common publication forums include:

  • arXiv (Cornell University)
  • Zenodo (CERN European Organization for Nuclear Research)
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nucleic Acids Research
  • Bioinformatics

Recent notable papers authored or co-authored by Pyysalo include:

  • The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets, 2020, Nucleic Acids Research
  • The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest, 2022, Nucleic Acids Research
  • Correction to 'The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets', 2021, Nucleic Acids Research
  • Universal Dependencies v2: An Evergrowing Multilingual Treebank Collection, 2020, arXiv (Cornell University)
  • The STRING database in 2025: protein networks with directionality of regulation, 2024, Nucleic Acids Research

Best Publications

  • The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest

    Unknown

  • The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.

    Damian Szklarczyk;Annika L. Gable;Katerina C. Nastou;David Lyon

  • Universal Dependencies v1: A Multilingual Treebank Collection

    Joakim Nivre;Marie-Catherine de Marneffe;Filip Ginter;Yoav Goldberg

  • BLOOM: A 176B-Parameter Open-Access Multilingual Language Model

    Unknown

  • brat: a Web-based Tool for NLP-Assisted Text Annotation

    Pontus Stenetorp;Sampo Pyysalo;Goran Topić;Tomoko Ohta

  • Overview of BioNLP'09 Shared Task on Event Extraction

    Jin-Dong Kim;Tomoko Ohta;Sampo Pyysalo;Yoshinobu Kano

  • Universal Dependencies 2.2

    Joakim Nivre;Mitchell Abrams;Željko Agić;Lars Ahrenberg

  • BioInfer: a corpus for information extraction in the biomedical domain

    Sampo Pyysalo;Filip Ginter;Juho Heimonen;Jari Björne

  • Correction to ‘The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets’

    Unknown

  • Distributional Semantics Resources for Biomedical Text Processing

    S Pyysalo;F Ginter;H Moen;T Salakoski

  • CoNLL 2017 Shared Task: Multilingual Parsing from Raw Text to Universal Dependencies

    Daniel Zeman;Martin Popel;Milan Straka;Jan Hajic

  • How to Train good Word Embeddings for Biomedical NLP

    Billy Chiu;Gamal K. O. Crichton;Anna Korhonen;Sampo Pyysalo

  • All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

    Antti Airola;Sampo Pyysalo;Jari Björne;Tapio Pahikkala

  • Universal Dependencies v2: An Evergrowing Multilingual Treebank Collection

    Joakim Nivre;Marie-Catherine de Marneffe;Filip Ginter;Jan Hajic

  • Comparative analysis of five protein-protein interaction corpora

    Sampo Pyysalo;Antti Airola;Juho Heimonen;Jari Björne

  • Event extraction for systems biology by text mining the literature.

    Sophia Ananiadou;Sampo Pyysalo;Jun’ichi Tsujii;Douglas B. Kell

  • Universal Dependencies 1.0

    Joakim Nivre;Cristina Bosco;Jinho Choi;Marie-Catherine de Marneffe

  • Universal Dependencies 2.1

    Joakim Nivre;Željko Agić;Lars Ahrenberg;Lene Antonsen

  • A neural network multi-task learning approach to biomedical named entity recognition

    Gamal K. O. Crichton;Sampo Pyysalo;Billy Chiu;Anna Korhonen

  • Overview of BioNLP Shared Task 2013

    Claire Nédellec;Robert Bossy;Jin-Dong Kim;Jung-Jae Kim

  • Overview of BioNLP Shared Task 2011

    Jin-Dong Kim;Sampo Pyysalo;Tomoko Ohta;Robert Bossy

  • Multilingual is not enough: BERT for Finnish

    Antti Virtanen;Jenna Kanerva;Rami Ilo;Jouni Luoma

  • Universal Dependencies 2.7

    Daniel Zeman;Joakim Nivre;Mitchell Abrams;Elia Ackermann

Frequent Co-Authors

Filip Ginter
Filip Ginter University of Turku
Jun'ichi Tsujii
Jun'ichi Tsujii University of Manchester
Tomoko Ohta
Tomoko Ohta University of Tokyo
Tapio Salakoski
Tapio Salakoski University of Turku
Sophia Ananiadou
Sophia Ananiadou University of Manchester
Christopher D. Manning
Christopher D. Manning Stanford University
Joakim Nivre
Joakim Nivre Uppsala University
Jan Hajič
Jan Hajič Charles University
Marie-Catherine de Marneffe
Marie-Catherine de Marneffe The Ohio State University
Slav Petrov
Slav Petrov Google (United States)

External Links

Personal website of Sampo Pyysalo Google Scholar page

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Best Scientists Citing Sampo Pyysalo

Sophia Ananiadou

Sophia Ananiadou

University of Manchester

Publications: 93

Tapio Salakoski

Tapio Salakoski

University of Turku

Publications: 54

Karin Verspoor

Karin Verspoor

RMIT University

Publications: 50

Jun'ichi Tsujii

Jun'ichi Tsujii

University of Manchester

Publications: 46

Zhiyong Lu

Zhiyong Lu

National Institutes of Health

Publications: 44

Zhihao Yang

Zhihao Yang

Dalian University of Technology

Publications: 43

Filip Ginter

Filip Ginter

University of Turku

Publications: 39

Christopher D. Manning

Christopher D. Manning

Stanford University

Publications: 35

Ulf Leser

Ulf Leser

Humboldt-Universität zu Berlin

Publications: 31

Makoto Miwa

Makoto Miwa

Toyota Technological Institute

Publications: 29

Joakim Nivre

Joakim Nivre

Uppsala University

Publications: 28

Dietrich Rebholz-Schuhmann

Dietrich Rebholz-Schuhmann

University of Cologne

Publications: 27

Yves Van de Peer

Yves Van de Peer

Ghent University

Publications: 22

Cathy H. Wu

Cathy H. Wu

University of Delaware

Publications: 22

Anna Korhonen

Anna Korhonen

University of Cambridge

Publications: 21

Udo Hahn

Udo Hahn

Friedrich Schiller University Jena

Publications: 20

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