Roger E. Bumgarner

Overview

Best Publications

• Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.

  Trey Ideker;Vesteinn Thorsson;Jeffrey A. Ranish;Rowan Christmas

  2660
  Citations

• The genome of the domesticated apple ( Malus × domestica Borkh.)

  Riccardo Velasco;Andrey Zharkikh;Jason Affourtit;Amit Dhingra

  2514
  Citations

• Direct multiplexed measurement of gene expression with color-coded probe pairs.

  Gary K Geiss;Roger E Bumgarner;Brian Birditt;Timothy Dahl

  2358
  Citations

• Gene expression in Pseudomonas aeruginosa biofilms

  Marvin Whiteley;M. Gita Bangera;Roger E. Bumgarner;Matthew R. Parsek

  1519
  Citations

• Evolutionary and biomedical insights from the rhesus macaque genome

  Richard A. Gibbs;Jeffrey Rogers

  1514
  Citations

• Benzene forms hydrogen bonds with water.

  Sakae Suzuki;Peter G. Green;Roger E. Bumgarner;Siddharth Dasgupta

  860
  Citations

• Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria

  Sujatha Srinivasan;Noah G. Hoffman;Martin T. Morgan;Frederick A. Matsen

  786
  Citations

• Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.

  Jun Zhu;Bin Zhang;Erin N Smith;Erin N Smith;Becky Drees

  654
  Citations

• Comparative hybridization of an array of 21,500 ovarian cDNAs for the discovery of genes overexpressed in ovarian carcinomas.

  Michèl Schummer;Wai Lap V. Ng;Roger E. Bumgarner;Peter S. Nelson

  630
  Citations

• Standardizing global gene expression analysis between laboratories and across platforms

  Theodore Bammler;Richard P. Beyer;Sanchita Bhattacharya;Gary A. Boorman

  600
  Citations

• Bayesian model averaging: development of an improved multi-class, gene selection and classification tool for microarray data

  Ka Yee Yeung;Roger E. Bumgarner;Adrian E. Raftery

  577
  Citations

• Overview of DNA microarrays: types, applications, and their future.

  Roger Bumgarner

  557
  Citations

• Cellular transcriptional profiling in influenza A virus-infected lung epithelial cells: The role of the nonstructural NS1 protein in the evasion of the host innate defense and its potential contribution to pandemic influenza

  Gary K. Geiss;Mirella Salvatore;Terrence M. Tumpey;Victoria S. Carter

  556
  Citations

• Large-scale monitoring of host cell gene expression during HIV-1 infection using cDNA microarrays.

  Gary K. Geiss;Roger E. Bumgarner;Mahru C. An;Michael B. Agy

  309
  Citations

• Clustering gene-expression data with repeated measurements.

  Ka Yee Yeung;Mario Medvedovic;Roger E Bumgarner

  308
  Citations

• Bayesian mixture model based clustering of replicated microarray data

  M. Medvedovic;K.Y. Yeung;R.E. Bumgarner

  283
  Citations

• A Comprehensive View of Regulation of Gene Expression by Double-stranded RNA-mediated Cell Signaling *

  Gary Geiss;Ge Jin;Jinjiao Guo;Roger Bumgarner

  267
  Citations

• Stitching together Multiple Data Dimensions Reveals Interacting Metabolomic and Transcriptomic Networks That Modulate Cell Regulation

  Jun Zhu;Pavel Sova;Qiuwei Xu;Kenneth M. Dombek

  264
  Citations

• Cellular Gene Expression upon Human Immunodeficiency Virus Type 1 Infection of CD4+-T-Cell Lines

  Angélique B. van 't Wout;Ginger K. Lehrman;Svetlana A. Mikheeva;Gemma C. O'Keeffe

  241
  Citations

• Direct multiplexed measurement of gene expression with color-coded probe pairs (vol 26, pg 317, 2008)

  GK Geiss;RE Bumgarner;B Birditt;T Dahl

  234
  Citations