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D-Index & Metrics

Chemistry

D-Index
48
Citations
93803
World Ranking
15032
National Ranking
3829

Best Publications

  • Phenix - a comprehensive python-based system for macromolecular structure solution

    Paul D Adams;Paul D Adams;Pavel Afonine;Gábor Bunkóczi;Vincent B Chen

  • PHENIX: a comprehensive Python-based system for macromolecular structure solution

    Paul D. Adams;Paul D. Adams;Pavel V. Afonine;Gábor Bunkóczi;Vincent B. Chen

  • Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

    D. Liebschner;P.V. Afonine;M.L. Baker;G. Bunkóczi

  • Towards automated crystallographic structure refinement with phenix.refine

    Pavel V. Afonine;Ralf W. Grosse-Kunstleve;Nathaniel Echols;Jeffrey J. Headd

  • Real-space refinement in PHENIX for cryo-EM and crystallography.

    Pavel V. Afonine;Pavel V. Afonine;Billy K. Poon;Randy J. Read;Oleg V. Sobolev

  • Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

    Thomas C Terwilliger;Ralf W Grosse-Kunstleve;Pavel V Afonine;Nigel W Moriarty

  • The Phenix software for automated determination of macromolecular structures.

    Paul D. Adams;Pavel V. Afonine;Gábor Bunkóczi;Vincent B. Chen

  • Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard

    Thomas C Terwilliger;Paul D Adams;Randy J Read;Airlie J McCoy

  • Polder maps: improving OMIT maps by excluding bulk solvent.

    Dorothee Liebschner;Pavel V. Afonine;Nigel W. Moriarty;Billy K. Poon

  • Automated Structure Solution with the PHENIX Suite

    Peter H. Zwart;Pavel V. Afonine;Ralf W. Grosse-Kunstleve;Li-Wei Hung

  • Structure of photosystem II and substrate binding at room temperature

    Iris D. Young;Mohamed Ibrahim;Ruchira Chatterjee;Sheraz Gul

  • Modelling dynamics in protein crystal structures by ensemble refinement

    B Tom Burnley;Pavel V Afonine;Paul D Adams;Paul D Adams;Piet Gros

  • Joint X-ray and neutron refinement with phenix.refine

    Pavel V. Afonine;Marat Mustyakimov;Ralf W. Grosse-Kunstleve;Nigel W. Moriarty

  • AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination

    Unknown

  • Structure and membrane remodeling activity of ESCRT-III helical polymers.

    John McCullough;Amy K. Clippinger;Nathaniel Talledge;Michael L. Skowyra

  • New tools for structure refinement in PHENIX

    Paul Adams;Pavel Afonine;Nat Echols;Jeff Headd

  • Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution.

    Jeffrey J. Headd;Nathaniel Echols;Pavel V. Afonine;Ralf W. Grosse-Kunstleve

  • Iterative-build OMIT maps: map improvement by iterative model building and refinement without model bias.

    Thomas C. Terwilliger;Ralf W. Grosse-Kunstleve;Pavel V. Afonine;Nigel W. Moriarty

  • A robust bulk-solvent correction and anisotropic scaling procedure

    Pavel V. Afonine;Ralf W. Grosse-Kunstleve;Paul D. Adams

  • A global Ramachandran score identifies protein structures with unlikely stereochemistry

    Oleg V. Sobolev;Pavel V. Afonine;Nigel W. Moriarty;Maarten L. Hekkelman

Frequent Co-Authors

Paul D. Adams
Paul D. Adams Lawrence Berkeley National Laboratory
Thomas C. Terwilliger
Thomas C. Terwilliger Los Alamos National Laboratory
Randy J. Read
Randy J. Read University of Cambridge
Ralf W. Grosse-Kunstleve
Ralf W. Grosse-Kunstleve Lawrence Berkeley National Laboratory
Jane S. Richardson
Jane S. Richardson Duke University
David C. Richardson
David C. Richardson Duke University
Wah Chiu
Wah Chiu Stanford University
Helen M. Berman
Helen M. Berman Rutgers, The State University of New Jersey
Axel T. Brunger
Axel T. Brunger Stanford University
Frank DiMaio
Frank DiMaio University of Washington

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