Paul Pavlidis

Overview

Best Publications

• Coexpression Analysis of Human Genes Across Many Microarray Data Sets

  Homin K. Lee;Amy K. Hsu;Jon Sajdak;Jie Qin

  932
  Citations

• Molecular and Functional Heterogeneity of Hyperpolarization-Activated Pacemaker Channels in the Mouse CNS

  Bina Santoro;Shan Chen;Anita Lüthi;Paul Pavlidis

  713
  Citations

• Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model

  Kimberly L. Stark;Bin Xu;Anindya Bagchi;Wen Sung Lai

  666
  Citations

• Zac1 Regulates an Imprinted Gene Network Critically Involved in the Control of Embryonic Growth

  Annie Varrault;Charlotte Gueydan;Annie Delalbre;Anja Bellmann

  518
  Citations

• Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons.

  Corina Nagy;Malosree Maitra;Arnaud Tanti;Matthew Suderman

  510
  Citations

• An expanded evaluation of protein function prediction methods shows an improvement in accuracy

  Yuxiang Jiang;Tal Ronnen Oron;Wyatt T. Clark;Asma R. Bankapur

  453
  Citations

• Gene functional classification from heterogeneous data

  Paul Pavlidis;Jason Weston;Jinsong Cai;William Noble Grundy

  428
  Citations

• Matrix2png: a utility for visualizing matrix data

  Paul Pavlidis;William Stafford Noble

  421
  Citations

• De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability

  S E McCarthy;J Gillis;M Kramer;J Lihm

  408
  Citations

• Analysis of strain and regional variation in gene expression in mouse brain

  Paul Pavlidis;William S Noble

  341
  Citations

• miR-1202 is a primate-specific and brain-enriched microRNA involved in major depression and antidepressant treatment.

  Juan Pablo Lopez;Raymond Lim;Cristiana Cruceanu;Liam Crapper

  339
  Citations

• Learning Gene Functional Classifications from Multiple Data Types

  Paul Pavlidis;Jason Weston;Jinsong Cai;William Stafford Noble

  335
  Citations

• ErmineJ: Tool for functional analysis of gene expression data sets

  Homin K Lee;William Braynen;William Braynen;Kiran Keshav;Paul Pavlidis

  328
  Citations

• Activation of MAPK pathways links LMNA mutations to cardiomyopathy in Emery-Dreifuss muscular dystrophy

  Antoine Muchir;Paul Pavlidis;Valérie Decostre;Alan J. Herron

  321
  Citations

• Inducible enhancement of memory storage and synaptic plasticity in transgenic mice expressing an inhibitor of ATF4 (CREB-2) and C/EBP proteins.

  Amy Chen;Isabel A Muzzio;Gaël Malleret;Dusan Bartsch

  308
  Citations

• Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms

  Michael Barnes;Johannes Freudenberg;Susan Thompson;Bruce Aronow

  303
  Citations

• An expanded evaluation of protein function prediction methods shows an improvement in accuracy

  Yuxiang Jiang;Tal Ronnen Oron;Wyatt T Clark;Asma R Bankapur

  302
  Citations

• The Drosophila Easily Shocked Gene: A Mutation in a Phospholipid Synthetic Pathway Causes Seizure, Neuronal Failure, and Paralysis

  Paul Pavlidis;Mani Ramaswami;Mark A. Tanouye

  297
  Citations

• Using the Gene Ontology for Microarray Data Mining: A Comparison of Methods and Application to Age Effects in Human Prefrontal Cortex

  Paul Pavlidis;Jie Qin;Victoria Arango;Victoria Arango;John J. Mann;John J. Mann

  292
  Citations

• Additional file 1 of An expanded evaluation of protein function prediction methods shows an improvement in accuracy

  Yuxiang Jiang;Tal Ronnen Oron;Wyatt T. Clark;Asma R. Bankapur

  1
  Citations