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D-Index & Metrics

Biology and Biochemistry

D-Index
59
Citations
13915
World Ranking
12436
National Ranking
5323

Overview

Nathan Salomonis is affiliated with Cincinnati Children's Hospital Medical Center in the United States. Their research primarily spans the fields of Biochemistry, Genetics, and Molecular Biology as well as Medicine.

Their extensive work includes significant contributions to subfields such as Molecular Biology, Immunology, Hematology, Genetics, and Pulmonary and Respiratory Medicine. Key research topics addressed by Salomonis involve Single-cell and spatial transcriptomics, Acute Myeloid Leukemia Research, RNA Research and Splicing, Immune Cell Function and Interaction, RNA modifications and cancer, Immune cells in cancer, and Cancer Genomics and Diagnostics.

Salomonis has published in numerous scientific journals, with frequent contributions to:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Blood
  • Nature Communications
  • Experimental Hematology
  • Nature Immunology

Among recent publications, notable papers include:

  • "Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers" (2020), published in Nature Communications
  • "Combinatorial Single-Cell Analyses of Granulocyte-Monocyte Progenitor Heterogeneity Reveals an Early Uni-potent Neutrophil Progenitor" (2020), published in Immunity
  • "Asymmetrically Segregated Mitochondria Provide Cellular Memory of Hematopoietic Stem Cell Replicative History and Drive HSC Attrition" (2020), published in Cell stem cell
  • "A census of the lung: CellCards from LungMAP" (2021), published in Developmental Cell
  • "DeepImmuno: deep learning-empowered prediction and generation of immunogenic peptides for T-cell immunity" (2021), published in Briefings in Bioinformatics

Salomonis collaborates frequently with a number of scientists, including:

  • H. Leighton Grimes
  • Kashish Chetal
  • Guangyuan Li
  • Daniel Schnell
  • Kyle Ferchen

Best Publications

  • GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways.

    Kam D. Dahlquist;Nathan Salomonis;Karen Vranizan;Steven C. Lawlor

  • MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

    Scott W Doniger;Nathan Salomonis;Kam D Dahlquist;Karen Vranizan;Karen Vranizan

  • Single-cell analysis of mixed-lineage states leading to a binary cell fate choice

    Andre Olsson;Meenakshi Venkatasubramanian;Viren K. Chaudhri;Bruce J. Aronow

  • Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity

    John B. Harley;Xiaoting Chen;Mario Pujato;Daniel Miller

  • AltAnalyze and DomainGraph: analyzing and visualizing exon expression data

    Dorothea Emig;Nathan Salomonis;Jan Baumbach;Thomas Lengauer

  • Granulocyte-Monocyte Progenitors and Monocyte-Dendritic Cell Progenitors Independently Produce Functionally Distinct Monocytes

    Alberto Yáñez;Simon Coetzee;Andre Olsson;David Muench

  • GenMAPP 2: new features and resources for pathway analysis

    Nathan Salomonis;Kristina Hanspers;Alexander C. Zambon;Karen Vranizan

  • Lentiviral vectors and protocols for creation of stable hESC lines for fluorescent tracking and drug resistance selection of cardiomyocytes.

    Hiroko Kita-Matsuo;Maria Barcova;Natalie Prigozhina;Nathan Salomonis

  • Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers.

    Michael J. Petrany;Casey O. Swoboda;Chengyi Sun;Kashish Chetal

  • Time- and exercise-dependent gene regulation in human skeletal muscle

    Alexander C Zambon;Erin L McDearmon;Nathan Salomonis;Karen M Vranizan

  • Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation

    Nathan Salomonis;Christopher R. Schlieve;Laura Pereira;Christine Wahlquist

  • Combinatorial Single-Cell Analyses of Granulocyte-Monocyte Progenitor Heterogeneity Reveals an Early Uni-potent Neutrophil Progenitor

    Immanuel Kwok;Immanuel Kwok;Etienne Becht;Yu Xia;Yu Xia;Melissa Ng

  • Reactive oxygen species-mediated therapeutic response and resistance in glioblastoma

    E Singer;J Judkins;N Salomonis;L Matlaf

  • U2AF1 mutations induce oncogenic IRAK4 isoforms and activate innate immune pathways in myeloid malignancies.

    Molly A. Smith;Molly A. Smith;Gaurav S. Choudhary;Andrea Pellagatti;Kwangmin Choi

  • Conditional expression of a Gi-coupled receptor causes ventricular conduction delay and a lethal cardiomyopathy

    Charles H. Redfern;Michael Y. Degtyarev;Andrew T. Kwa;Nathan Salomonis

  • The Human Cell Atlas bone marrow single-cell interactive web portal

    Stuart B. Hay;Kyle Ferchen;Kashish Chetal;H. Leighton Grimes;H. Leighton Grimes

  • Mammary gland involution as a multi-step process.

    Torsten Stein;Nathan Salomonis;Barry A. Gusterson

  • A robust method to derive functional neural crest cells from human pluripotent stem cells

    Faith R Kreitzer;Nathan Salomonis;Alice Sheehan;Miller Huang

  • The kSORT assay to detect renal transplant patients at high risk for acute rejection: results of the multicenter AART study.

    Silke Roedder;Tara Sigdel;Nathan Salomonis;Sue Hsieh

  • DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data

    Erica A.K. DePasquale;Erica A.K. DePasquale;Daniel J. Schnell;Pieter-Jan Van Camp;Pieter-Jan Van Camp;Íñigo Valiente-Alandí

Frequent Co-Authors

H. Leighton Grimes
H. Leighton Grimes Cincinnati Children's Hospital Medical Center
Bruce R. Conklin
Bruce R. Conklin University of California, San Francisco
Bruce J. Aronow
Bruce J. Aronow Cincinnati Children's Hospital Medical Center
Matthew T. Weirauch
Matthew T. Weirauch Cincinnati Children's Hospital Medical Center
Jose A. Cancelas
Jose A. Cancelas Cincinnati Children's Hospital Medical Center
Harinder Singh
Harinder Singh University of Pittsburgh
Claire A. Chougnet
Claire A. Chougnet Cincinnati Children's Hospital Medical Center
Yi Zheng
Yi Zheng Cincinnati Children's Hospital Medical Center
S. Steven Potter
S. Steven Potter Cincinnati Children's Hospital Medical Center
Alan H. Jobe
Alan H. Jobe Cincinnati Children's Hospital Medical Center

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