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Biology and Biochemistry

D-Index
52
Citations
8390
World Ranking
16819
National Ranking
314

Overview

Matteo Dal Peraro is affiliated with the École Polytechnique Fédérale de Lausanne in Switzerland. Their research spans multiple disciplines within biochemistry, genetics, and molecular biology, with a strong focus on molecular biology, biomedical engineering, materials chemistry, cell biology, and computational theory and mathematics.

The scientist's work covers various topics, notably nanopore and nanochannel transport studies, protein structure and dynamics, mitochondrial function and pathology, enzyme structure and function, lipid membrane structure and behavior, cellular transport and secretion, and computational drug discovery methods.

Recent publications by Matteo Dal Peraro include:

  • PeSTo: parameter-free geometric deep learning for accurate prediction of protein binding interfaces, 2023, Nature Communications
  • S-acylation controls SARS-CoV-2 membrane lipid organization and enhances infectivity, 2021, Developmental Cell
  • Aerolysin nanopores decode digital information stored in tailored macromolecular analytes, 2020, Science Advances
  • Structural mechanism of mitochondrial membrane remodelling by human OPA1, 2023, Nature
  • Biological nanopores for single-molecule sensing, 2022, iScience

Matteo Dal Peraro frequently publishes in venues such as bioRxiv (Cold Spring Harbor Laboratory), Biophysical Journal, Nature Communications, Science Advances, and iScience.

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Biophysical Journal
  • Nature Communications
  • Science Advances
  • iScience

The scientist collaborates regularly with several coauthors including Luciano A. Abriata, Lucien F. Krapp, María J. Marcaida, Chan Cao, and Juan F. Bada Juarez.

  • Luciano A. Abriata
  • Lucien F. Krapp
  • María J. Marcaida
  • Chan Cao
  • Juan F. Bada Juarez

Best Publications

  • Pore-forming toxins: ancient, but never really out of fashion

    Matteo Dal Peraro;F. Gisou van der Goot

  • Nucleo-cytosolic Shuttling of ARGONAUTE1 Prompts a Revised Model of the Plant MicroRNA Pathway

    Nicolas G. Bologna;Raphael Iselin;Luciano A. Abriata;Luciano A. Abriata;Alexis Sarazin

  • Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism.

    Matteo T Degiacomi;Matteo T Degiacomi;Ioan Iacovache;Ioan Iacovache;Lucile Pernot;Mohamed Chami

  • Palmitoylated calnexin is a key component of the ribosome–translocon complex

    Asvin K. K. Lakkaraju;Laurence Abrami;Thomas Lemmin;Sanja Blaskovic

  • Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

    Andrej Sali;Helen M. Berman;Torsten Schwede;Jill Trewhella

  • Evolution of Acid-Sensing Olfactory Circuits in Drosophilids

    Lucia L. Prieto-Godino;Raphael Rytz;Steeve Cruchet;Benoîte Bargeton

  • Cryo-EM structure of aerolysin variants reveals a novel protein fold and the pore-formation process.

    Ioan Iacovache;Sacha De Carlo;Nuria Cirauqui;Nuria Cirauqui;Matteo Dal Peraro;Matteo Dal Peraro

  • Protein post-translational modifications: In silico prediction tools and molecular modeling.

    Martina Audagnotto;Matteo Dal Peraro

  • Phosphodiester cleavage in ribonuclease H occurs via an associative two-metal-aided catalytic mechanism.

    Marco De Vivo;Matteo Dal Peraro;Michael L. Klein

  • Catalytic Metal Ions and Enzymatic Processing of DNA and RNA

    Giulia Palermo;Andrea Cavalli;Andrea Cavalli;Michael L. Klein;Mercedes Alfonso-Prieto

  • Olfactory receptor pseudo-pseudogenes.

    Lucia L. Prieto-Godino;Raphael Rytz;Benoîte Bargeton;Liliane Abuin

  • Molecular dynamics calculations suggest a conduction mechanism for the M2 proton channel from influenza A virus

    Ekta Khurana;Matteo Dal Peraro;Russell DeVane;Satyavani Vemparala

  • In situ structural analysis of the Yersinia enterocolitica injectisome

    Mikhail Kudryashev;Marco Stenta;Stefan Schmelz;Marlise Amstutz

  • Critical roles of isoleucine-364 and adjacent residues in a hydrophobic gate control of phospholipid transport by the mammalian P4-ATPase ATP8A2

    Anna L. Vestergaard;Jonathan A. Coleman;Thomas Lemmin;Stine A. Mikkelsen

  • ComEA Is Essential for the Transfer of External DNA into the Periplasm in Naturally Transformable Vibrio cholerae Cells

    Patrick Seitz;Hassan Pezeshgi Modarres;Sandrine Borgeaud;Roman D. Bulushev

  • Investigating biological systems using first principles Car–Parrinello molecular dynamics simulations

    Matteo Dal Peraro;Paolo Ruggerone;Simone Raugei;Francesco Luigi Gervasio

  • Cerebellar Ataxia and Coenzyme Q Deficiency through Loss of Unorthodox Kinase Activity.

    Jonathan A. Stefely;Jonathan A. Stefely;Floriana Licitra;Floriana Licitra;Floriana Licitra;Leila Laredj;Leila Laredj;Leila Laredj;Andrew G. Reidenbach;Andrew G. Reidenbach

  • Water-Assisted Reaction Mechanism of Monozinc β-Lactamases

    Matteo Dal Peraro;Leticia I. Llarrull;Ursula Rothlisberger;and Alejandro J. Vila

  • Role of zinc content on the catalytic efficiency of B1 metallo β-lactamases

    Matteo Dal Peraro;Alejandro J. Vila;Paolo Carloni;Michael L. Klein

  • Olfactory receptor pseudo-pseudogenes

    Richard Benton;Lucia Prieto-Godino;Raphael Rytz;Benoite Bargeton

Frequent Co-Authors

Alejandro J. Vila
Alejandro J. Vila National University of Rosario
Paolo Carloni
Paolo Carloni Forschungszentrum Jülich
F. Gisou van der Goot
F. Gisou van der Goot École Polytechnique Fédérale de Lausanne
Andrea Cavalli
Andrea Cavalli Italian Institute of Technology
Michael L. Klein
Michael L. Klein Temple University
Guy R. Cornelis
Guy R. Cornelis University of Namur
Richard Benton
Richard Benton University of Lausanne
Diego de Mendoza
Diego de Mendoza National University of Rosario
Bart Deplancke
Bart Deplancke École Polytechnique Fédérale de Lausanne
Aleksandra Radenovic
Aleksandra Radenovic École Polytechnique Fédérale de Lausanne

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