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Genetics

D-Index
66
Citations
18381
World Ranking
2598
National Ranking
41

Overview

Bart Deplancke is affiliated with the École Polytechnique Fédérale de Lausanne in Switzerland. Their research spans several fields within biology and medicine, with a significant focus on molecular biology, genetics, and immunology.

The scientist has contributed extensively to the areas of biochemistry, genetics, and molecular biology, reflected in a total of 135 publications. Within these fields, they have specialized in subfields such as molecular biology, immunology, genetics, physiology, and insect science. Their main topics of research include:

  • Single-cell and spatial transcriptomics
  • Genomics and chromatin dynamics
  • RNA research and splicing
  • Adipose tissue and metabolism
  • RNA and protein synthesis mechanisms
  • Immune cells in cancer
  • Insect symbiosis and bacterial influences

Deplancke has published in various scientific journals, frequently appearing in venues such as:

  • bioRxiv (Cold Spring Harbor Laboratory) with 31 publications
  • Nature Communications with 9 publications
  • Nature Genetics with 4 publications
  • PLoS Biology with 3 publications
  • eLife with 3 publications

Among their recent published papers are:

  • Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches, 2022, Cell
  • Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly, 2022, Science
  • Live-seq enables temporal transcriptomic recording of single cells, 2022, Nature
  • Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses, 2020, Molecular Biology and Evolution
  • Toward a Consensus View of Mammalian Adipocyte Stem and Progenitor Cell Heterogeneity, 2020, Trends in Cell Biology

Frequent co-authors of Deplancke include:

  • Vincent Gardeux
  • Julie Russeil
  • Daniel Alpern
  • Wouter Saelens
  • Joern Pezoldt

Best Publications

  • The Human Cell Atlas

    Aviv Regev;Aviv Regev;Aviv Regev;Sarah A Teichmann;Sarah A Teichmann;Sarah A Teichmann;Eric S Lander;Eric S Lander;Eric S Lander;Ido Amit

  • Microbial modulation of innate defense: goblet cells and the intestinal mucus layer

    B Deplancke;H R Gaskins

  • Exhaustion of tumor-specific CD8(+) T cells in metastases from melanoma patients

    Lukas Baitsch;Petra Baumgaertner;Estelle Devêvre;Sunil K. Raghav

  • Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines

    Wen Huang;Andreas Massouras;Andreas Massouras;Yutaka Inoue;Jason Peiffer

  • Morphological and Molecular Characterization of Adult Midgut Compartmentalization in Drosophila

    Nicolas Buchon;Dani Osman;Fabrice P.A. David;Hsiao Yu Fang

  • Tetracyclines Disturb Mitochondrial Function across Eukaryotic Models: A Call for Caution in Biomedical Research.

    Norman Moullan;Laurent Mouchiroud;Xu Wang;Dongryeol Ryu

  • Coordinated Effects of Sequence Variation on DNA Binding, Chromatin Structure, and Transcription

    Helena Kilpinen;Helena Kilpinen;Sebastian M. Waszak;Sebastian M. Waszak;Andreas R. Gschwind;Andreas R. Gschwind;Sunil K. Raghav

  • A stromal cell population that inhibits adipogenesis in mammalian fat depots

    Petra C. Schwalie;Hua Dong;Magda Zachara;Julie Russeil

  • The Genetics of Transcription Factor DNA Binding Variation

    Bart Deplancke;Daniel Alpern;Vincent Gardeux

  • Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

    Kazuhiro R Nitta;Arttu Jolma;Yimeng Yin;Ekaterina Morgunova

  • Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans

    Arnab Mukhopadhyay;Bart Deplancke;Albertha J M Walhout;Heidi A Tissenbaum

  • Fermentation by gut microbiota cultured in a Simulator of the Human Intestinal Microbial Ecosystem is improved by supplementing a soygerm powder

    Patrick De Boever;Bart Deplancke;Willy Verstraete

  • A gene-centered C. elegans protein-DNA interaction network

    Bart Deplancke;Arnab Mukhopadhyay;Wanyuan Ao;Ahmed M. Elewa

  • A Gateway-Compatible Yeast One-Hybrid System

    Bart Deplancke;Denis Dupuy;Marc Vidal;Albertha J.M. Walhout

  • A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks.

    John S Reece-Hoyes;Bart Deplancke;Jane Shingles;Christian A Grove

  • Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

    Sebastian M. Waszak;Sebastian M. Waszak;Olivier Delaneau;Olivier Delaneau;Andreas R. Gschwind;Andreas R. Gschwind;Helena Kilpinen;Helena Kilpinen

  • Molecular ecological analysis of porcine ileal microbiota responses to antimicrobial growth promoters.

    C. T. Collier;M. R. Smiricky-Tjardes;D. M. Albin;J. E. Wubben

  • Hydrogen sulfide induces serum-independent cell cycle entry in nontransformed rat intestinal epithelial cells

    Bart Deplancke;H. Rex Gaskins

  • A first version of the Caenorhabditis elegans Promoterome.

    Denis Dupuy;Qian-Ru Li;Bart Deplancke;Mike Boxem

  • Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.

    Gwendal Le Martelot;Donatella Canella;Laura Symul;Eugenia Migliavacca

Frequent Co-Authors

Albertha J.M. Walhout
Albertha J.M. Walhout University of Massachusetts Chan Medical School
Eric S. Lander
Eric S. Lander Broad Institute
Didier Trono
Didier Trono École Polytechnique Fédérale de Lausanne
Johan Auwerx
Johan Auwerx École Polytechnique Fédérale de Lausanne
Thomas Flatt
Thomas Flatt University of Fribourg
Nouria Hernandez
Nouria Hernandez University of Lausanne
Marc Robinson-Rechavi
Marc Robinson-Rechavi University of Lausanne
Sarah A. Teichmann
Sarah A. Teichmann University of Cambridge
Aviv Regev
Aviv Regev Genentech
Emmanouil T. Dermitzakis
Emmanouil T. Dermitzakis University of Geneva

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