World's Best Scientists 2026 revealed!

D-Index & Metrics

Genetics

D-Index
41
Citations
39412
World Ranking
4320
National Ranking
21

Overview

Karsten Hokamp is affiliated with Trinity College Dublin in Ireland. Their research primarily falls within the broad field of Biochemistry, Genetics and Molecular Biology, with 55 publications in this discipline.

Their work extensively covers several subfields including Molecular Biology, Food Science, Endocrinology, Immunology, and Oncology. They have contributed research topics encompassing Vibrio bacteria studies, Salmonella and Campylobacter epidemiology, fungal and yeast genetics, fermentation and sensory analysis, genetics, bioinformatics, biomedical research, RNA and protein synthesis mechanisms, as well as antibiotic resistance in bacteria.

Frequent publication venues for Karsten Hokamp include bioRxiv (Cold Spring Harbor Laboratory), where they have 10 publications, F1000Research with 6 publications, Nucleic Acids Research and PLoS Genetics each with 2 publications, and Microbial Genomics with 2 publications.

Recent papers authored or co-authored by Karsten Hokamp are as follows:

  • "Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica," 2021, PLoS Pathogens
  • "von Willebrand factor links primary hemostasis to innate immunity," 2022, Nature Communications
  • "A population of proinflammatory T cells coexpresses αβ and γδ T cell receptors in mice and humans," 2020, The Journal of Experimental Medicine
  • "Targeting the NLRP3 inflammasome reduces inflammation in hidradenitis suppurativa skin," 2023, British Journal of Dermatology
  • "The human tRNA-guanine transglycosylase displays promiscuous nucleobase preference but strict tRNA specificity," 2021, Nucleic Acids Research

Karsten collaborates frequently with several co-authors including Fiona Roche, Jay C. D. Hinton, Carsten Kröger, Fergal J. Hamrock, and Nomi L. Harris. The collaboration counts range from 5 to 11 joint publications.

Best Publications

  • Initial sequencing and analysis of the human genome.

    Eric S. Lander;Lauren M. Linton;Bruce Birren;Chad Nusbaum

  • A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome.

    Guillaume Blanc;Karsten Hokamp;Kenneth H. Wolfe

  • Modulation of the TLR-Mediated Inflammatory Response by the Endogenous Human Host Defense Peptide LL-37

    Neeloffer Mookherjee;Kelly L. Brown;Dawn M. E. Bowdish;Silvana Doria

  • Extensive genomic duplication during early chordate evolution

    Aoife McLysaght;Karsten Hokamp;Kenneth H. Wolfe

  • An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

    Carsten Kröger;Aoife Colgan;Shabarinath Srikumar;Kristian Händler

  • The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

    Carsten Kröger;Shane C. Dillon;Andrew D. S. Cameron;Kai Papenfort

  • InnateDB: facilitating systems-level analyses of the mammalian innate immune response

    David J Lynn;David J Lynn;Geoffrey L Winsor;Calvin Chan;Nicolas Richard

  • Circadian clock protein BMAL1 regulates IL-1β in macrophages via NRF2.

    James O. Early;Deepthi Menon;Cathy A. Wyse;Mariana P. Cervantes-Silva

  • RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium.

    Shabarinath Srikumar;Carsten Kröger;Carsten Kröger;Magali Hébrard;Aoife Colgan

  • The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns.

    Jackie Dolan;Karen Walshe;Samantha Alsbury;Karsten Hokamp

  • Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa.

    Carol J Loscher;Karsten Hokamp;Paul F Kenna;Alasdair C Ivens

  • A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities.

    Eric Conway;Emilia Jerman;Evan Healy;Shinsuke Ito

  • Bovine and human cathelicidin cationic host defense peptides similarly suppress transcriptional responses to bacterial lipopolysaccharide.

    Neeloffer Mookherjee;Heather L. Wilson;Silvana Doria;Yurij Popowych

  • Receptor-mediated recognition of mycobacterial pathogens.

    Kate E. Killick;Clíona Ní Cheallaigh;Cliona O'Farrelly;Karsten Hokamp

  • The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium

    Aoife M. Colgan;Carsten Kröger;Médéric Diard;Wolf-Dietrich Hardt

  • Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS.

    Daniel M. Stoebel;Karsten Hokamp;Charles J. Dorman

  • The complex relationship of gene duplication and essentiality.

    Takashi Makino;Karsten Hokamp;Aoife McLysaght

  • A Model System for Studying the Transcriptomic and Physiological Changes Associated with Mammalian Host-Adaptation by Leptospira interrogans Serovar Copenhageni

    Melissa J. Caimano;Sathesh K. Sivasankaran;Anna Allard;Daniel Hurley

  • Comparative Transcript Profiling of Candida albicans and Candida dubliniensis Identifies SFL2, a C. albicans Gene Required for Virulence in a Reconstituted Epithelial Infection Model

    Martin J. Spiering;Gary P. Moran;Murielle Chauvel;Murielle Chauvel;Donna M. MacCallum

  • Characterization of protein C receptor expression in monocytes

    Leeona Galligan;Wendy Livingstone;Yuri Volkov;Karsten Hokamp

Frequent Co-Authors

Jay C. D. Hinton
Jay C. D. Hinton University of Liverpool
Lorne A. Babiuk
Lorne A. Babiuk University of Alberta
Kenneth H. Wolfe
Kenneth H. Wolfe University College Dublin
Fiona S. L. Brinkman
Fiona S. L. Brinkman Simon Fraser University
David E. MacHugh
David E. MacHugh University College Dublin
Eamonn Gormley
Eamonn Gormley University College Dublin
Robert E. W. Hancock
Robert E. W. Hancock University of British Columbia
Melita A. Gordon
Melita A. Gordon University of Liverpool
G. Jane Farrar
G. Jane Farrar Trinity College Dublin
Charles J. Dorman
Charles J. Dorman Trinity College Dublin

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