Freek T. Bakker

Best Publications

• Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences

  Unknown

  596
  Citations

• Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole‐genome sequencing

  Saulo Aflitos;Elio Schijlen;Hans de Jong

  425
  Citations

• Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae).

  Thomas L. P. Couvreur;Andreas Franzke;Ihsan A. Al-Shehbaz;Freek T. Bakker

  407
  Citations

• How to Open the Treasure Chest? Optimising DNA Extraction from Herbarium Specimens

  Tiina Särkinen;Martijn Staats;James E. Richardson;James E. Richardson;Robyn S. Cowan

  312
  Citations

• Origin and diversification of the Greater Cape flora: Ancient species repository, hot-bed of recent radiation, or both?

  G. Anthony Verboom;Jenny K. Archibald;Freek T. Bakker;Dirk U. Bellstedt

  266
  Citations

• Phylogeny, function, and evolution of the cupins, a structurally conserved, functionally diverse superfamily of proteins

  Sawsan Khuri;Freek T. Bakker;Jim M. Dunwell

  216
  Citations

• Chloroplast Phylogeny of Asplenioid Ferns based on rbcL and trnL-F Spacer Sequences (Polypodiidae, Aspleniaceae) and its Implications for Biogeography

  Harald Schneider;Harald Schneider;Steve J. Russell;Cymon J. Cox;Freek Bakker

  191
  Citations

• Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline

  Freek T. Bakker;Di Lei;Jiaying Yu;Setareh Mohammadin

  182
  Citations

• Large-scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near-simultaneous evolutionary origin of all six subfamilies.

  Erik J. M. Koenen;Dario I. Ojeda;Royce Steeves;Royce Steeves;Jérémy Migliore

  170
  Citations

• The Origin of the Legumes is a Complex Paleopolyploid Phylogenomic Tangle Closely Associated with the Cretaceous-Paleogene (K-Pg) Mass Extinction Event

  Erik J M Koenen;Dario I Ojeda;Freek T Bakker;Jan J Wieringa

  164
  Citations

• Reconstructing patterns of reticulate evolution in angiosperms: what can we do?

  Unknown

  149
  Citations

• Evolution of nuclear rDNA ITS sequences in the Cladophora albida/sericea clade (Chlorophyta).

  Freek T. Bakker;Jeanine L. Olsen;Wytze T. Stam

  146
  Citations

• Biomass partitioning and root morphology of savanna trees across a water gradient

  Kyle W. Tomlinson;Frank J. Sterck;Frans Bongers;Dulce A. da Silva

  143
  Citations

• Positive selection in phytotoxic protein-encoding genes of Botrytis species.

  Martijn Staats;Peter van Baarlen;Alexander Schouten;Jan A.L. van Kan

  140
  Citations

• Molecular phylogenetics and character evolution of Cannabaceae

  M.Q. Yang;R. van Velzen;F.T. Bakker;A. Sattarian

  131
  Citations

• Nuclear ribosomal DNA internal transcribed spacer regions (ITS1 and ITS2) define discrete biogeographic groups in Cladophora albida (Chlorophyta)

  F.T. Bakker;J.L. Olsen;W.T. Stam;C. van den Hoek

  119
  Citations

• Phylogeny of Pelargonium (Geraniaceae) based on DNA sequences from three genomes

  Unknown

  117
  Citations

• In silico characterization and molecular evolutionary analysis of a novel superfamily of fungal effector proteins

  Ioannis Stergiopoulos;Yiannis A.I. Kourmpetis;Yiannis A.I. Kourmpetis;Jason C. Slot;Freek T. Bakker

  105
  Citations

• Phylogeny, morphological evolution, and speciation of endemic brassicaceae genera in the cape flora of Southern Africa

  K. Mummenhoff;I.A. Al-Shehbaz;F.T. Bakker;H.P. Linder

  104
  Citations

• Bias and conflict in phylogenetic inference of myco-heterotrophic plants: a case study in Thismiaceae

  Vincent Merckx;Freek T. Bakker;Suzy Huysmans;Erik Smets;Erik Smets

  83
  Citations