D-Index & Metrics Best Publications
Erik L. L. Sonnhammer

Erik L. L. Sonnhammer

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Genetics and Molecular Biology D-index 45 Citations 27,530 86 World Ranking 4322 National Ranking 53

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • DNA
  • Statistics

His primary areas of investigation include Genetics, Computational biology, Inparanoid, Gene and Genome. In general Genetics study, his work on Sequence analysis, Nucleic acid sequence and Gene expression profiling often relates to the realm of Nematode and Cell cycle checkpoint, thereby connecting several areas of interest. Erik L. L. Sonnhammer conducts interdisciplinary study in the fields of Computational biology and Rfam through his research.

His Inparanoid research integrates issues from Sequence homology, Phylogenetics, Pairwise comparison and UniProt. Erik L. L. Sonnhammer has included themes like Lineage, Phylogenetic tree, Cluster analysis, Protein family and Helminth genetics in his Genome study. The various areas that Erik L. L. Sonnhammer examines in his Transmembrane protein study include Integral membrane protein, Protein structure prediction, Fungal protein and Topology.

His most cited work include:

  • The Pfam protein families database (13194 citations)
  • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes (8874 citations)
  • Pfam: the protein families database. (3852 citations)

What are the main themes of his work throughout his whole career to date?

His main research concerns Computational biology, Genetics, Gene, Data mining and Gene regulatory network. His Computational biology research includes themes of Domain, Gene expression profiling, Protein domain, Function and Genomics. His Protein domain study combines topics in areas such as Protein function prediction and Homology.

His research integrates issues of Bioinformatics, Software, Multiple sequence alignment, Benchmark and Sequence in his study of Data mining. His studies in Gene regulatory network integrate themes in fields like Biological network, Inference and Crosstalk. His Sequence homology research focuses on Proteome and how it connects with Transmembrane protein.

He most often published in these fields:

  • Computational biology (43.72%)
  • Genetics (35.52%)
  • Gene (27.32%)

What were the highlights of his more recent work (between 2017-2021)?

  • Computational biology (43.72%)
  • Gene regulatory network (18.03%)
  • Inference (18.58%)

In recent papers he was focusing on the following fields of study:

Erik L. L. Sonnhammer mostly deals with Computational biology, Gene regulatory network, Inference, Gene regulatory network inference and Genome. His work deals with themes such as Repetitive Sequences, Protein Families Database, Cancer gene, Homology and Gene duplication, which intersect with Computational biology. His Protein Families Database research incorporates themes from Sequence Ontology, Proteins metabolism, Protein methods and UniProt Knowledgebase.

The Gene regulatory network study combines topics in areas such as Data type, Information transfer and Phylogenetic tree. His Inference research is multidisciplinary, relying on both SIGNAL, Gene and Synthetic data. His Genome research incorporates elements of Field and State.

Between 2017 and 2021, his most popular works were:

  • The Pfam protein families database in 2019. (1886 citations)
  • Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity (124 citations)
  • Pfam: The protein families database in 2021. (55 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • DNA
  • Statistics

Erik L. L. Sonnhammer mainly investigates Computational biology, Protein Families Database, Repetitive Sequences, Gene family and Genome. His Computational biology research includes themes of Data type, Information transfer, Phylogenetic tree, Genomics and Homology. The Protein Families Database study combines topics in areas such as Proteins metabolism, Protein methods and UniProt Knowledgebase.

His Repetitive Sequences study combines topics from a wide range of disciplines, such as Functional annotation, Sequence Ontology and Molecular Sequence Annotation. His work on Model organism expands to the thematically related Gene family. His research in Genome intersects with topics in Metagenomics and Protein family.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

The Pfam protein families database

Marco Punta;Penny C. Coggill;Ruth Y. Eberhardt;Jaina Mistry.
Nucleic Acids Research (2000)

13194 Citations

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

A Krogh;B Larsson;G von Heijne;E L Sonnhammer.
Journal of Molecular Biology (2001)

11193 Citations

Pfam: the protein families database.

Robert D. Finn;Alex Bateman;Jody Clements;Penelope Coggill.
Nucleic Acids Research (2014)

4866 Citations

The Pfam protein families database in 2019.

Sara El-Gebali;Jaina Mistry;Alex Bateman;Sean R Eddy.
Nucleic Acids Research (2019)

3273 Citations

A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences

Erik L. L. Sonnhammer;Gunnar von Heijne;Anders Krogh.
intelligent systems in molecular biology (1998)

2864 Citations

Pfam: clans, web tools and services

Robert D. Finn;Jaina Mistry;Benjamin Schuster-Böckler;Sam Griffiths-Jones.
Nucleic Acids Research (2006)

2505 Citations

A combined transmembrane topology and signal peptide prediction method.

Lukas Käll;Anders Krogh;Erik L.L Sonnhammer.
Journal of Molecular Biology (2004)

2131 Citations

2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans

R. Wilson;R. Ainscough;K. Anderson;C. Baynes.
Nature (1994)

1815 Citations

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.

Maido Remm;Christian E.V. Storm;Erik L.L. Sonnhammer.
Journal of Molecular Biology (2001)

1460 Citations

PFAM : A COMPREHENSIVE DATABASE OF PROTEIN DOMAIN FAMILIES BASED ON SEED ALIGNMENTS

Erik L.L. Sonnhammer;Sean R. Eddy;Richard Durbin.
Proteins (1997)

1410 Citations

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