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Darren J. Wilkinson

Darren J. Wilkinson

D-Index & Metrics

Computer Science

D-Index
33
Citations
7886
World Ranking
12416
National Ranking
791

Overview

Darren J. Wilkinson is affiliated with Durham University in the United Kingdom. Their research covers multiple fields related to biochemistry, genetics, molecular biology, environmental science, and engineering. A significant portion of their work addresses subfields such as molecular biology, safety and risk assessments, civil and structural engineering, global and planetary change, and atmospheric science.

The research topics overseen include geotechnical engineering and analysis, soil and unsaturated flow, gene regulatory network analysis, microbial metabolic engineering and bioproduction, Bayesian methods and mixture models, gene expression and cancer classification, as well as meteorological phenomena and simulations.

Among their recent papers are:

  • MGnify: the microbiome sequence data analysis resource in 2023, 2022, published in Nucleic Acids Research
  • SBML Level 3: an extensible format for the exchange and reuse of biological models, 2020, published in Molecular Systems Biology
  • Emulating computer experiments of transport infrastructure slope stability using Gaussian processes and Bayesian inference, 2021, published in Data-Centric Engineering
  • Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1, 2020, published in Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics
  • A sparse Bayesian hierarchical vector autoregressive model for microbial dynamics in a wastewater treatment plant, 2022, published in Computational Statistics & Data Analysis

Frequent co-authors collaborating with them include:

  • Sarah E. Heaps
  • Aleksandra Svalova
  • S. G. Glendinning
  • Dennis Prangle
  • Thomas P. Curtis

Their publications often appear in venues such as arXiv (Cornell University), Data-Centric Engineering, Nucleic Acids Research, Molecular Systems Biology, and Computational Statistics & Data Analysis.

Best Publications

  • Stochastic Modelling for Systems Biology

    Darren James Wilkinson

  • Stochastic modelling for quantitative description of heterogeneous biological systems

    Darren J. Wilkinson

  • A review of stochastic block models and extensions for graph clustering

    Clement Lee;Darren J. Wilkinson;Darren J. Wilkinson

  • Bayesian parameter inference for stochastic biochemical network models using particle Markov chain Monte Carlo

    Andrew Golightly;Darren J. Wilkinson

  • Controlled vocabularies and semantics in systems biology

    Mélanie Courtot;Nick Juty;Christian Knüpfer;Dagmar Waltemath

  • Bayesian inference for a discretely observed stochastic kinetic model

    R. J. Boys;D. J. Wilkinson;T. B. Kirkwood

  • SBML Level 3: an extensible format for the exchange and reuse of biological models

    Sarah M. Keating;Sarah M. Keating;Dagmar Waltemath;Matthias König;Fengkai Zhang

  • Bayesian methods in bioinformatics and computational systems biology

    Darren J. Wilkinson

  • Bayesian inference for stochastic kinetic models using a diffusion approximation.

    A. Golightly;D. J. Wilkinson

  • Bayesian inference for nonlinear multivariate diffusion models observed with error

    A. Golightly;D. J. Wilkinson

  • The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.

    Michael Hucka;Frank T. Bergmann;Claudine Chaouiya;Andreas Dräger

  • EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.

    Alex L. Mitchell;Maxim Scheremetjew;Hubert Denise;Simon C. Potter

  • Bayesian sequential inference for nonlinear multivariate diffusions

    Andrew Golightly;Darren J. Wilkinson

  • Bayesian Sequential Inference for Stochastic Kinetic Biochemical Network Models

    Andrew Golightly;Darren J. Wilkinson

  • Towards an e-biology of ageing: integrating theory and data

    Thomas B.L. Kirkwood;Richard J. Boys;Colin S. Gillespie;Carole J. Proctor

  • The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

    Unknown

  • Parallel Bayesian Computation

    DJ Wilkinson

  • Detecting homogeneous segments in DNA sequences by using hidden Markov models

    Richard J. Boys;Daniel A. Henderson;Darren J. Wilkinson

  • The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

    Lucian Smith;Darren Wilkinson;Michael Hucka;Frank Bergmann

  • Bayesian Emulation and Calibration of a Stochastic Computer Model of Mitochondrial DNA Deletions in Substantia Nigra Neurons

    Daniel A. Henderson;Richard J. Boys;Kim J. Krishnan;Conor Lawless

  • Colonyzer: automated quantification of micro-organism growth characteristics on solid agar

    Conor Lawless;Darren J Wilkinson;Alexander Young;Stephen G Addinall

Frequent Co-Authors

Thomas B. L. Kirkwood
Thomas B. L. Kirkwood Newcastle University
Michael Hucka
Michael Hucka California Institute of Technology
Thomas P. Curtis
Thomas P. Curtis Newcastle University
Nicolas Le Novère
Nicolas Le Novère Babraham Institute
Chris J. Myers
Chris J. Myers University of Colorado Boulder
Sheldon Bacon
Sheldon Bacon National Oceanography Centre
Pedro Mendes
Pedro Mendes University of Connecticut
Claudine Chaouiya
Claudine Chaouiya Aix-Marseille University
Douglas B. Kell
Douglas B. Kell University of Liverpool
Phillip Lord
Phillip Lord Newcastle University

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