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Genetics

D-Index
78
Citations
23439
World Ranking
1694
National Ranking
58

Overview

Bauke Ylstra is affiliated with Vrije Universiteit Amsterdam in the Netherlands and has contributed extensively to the fields of medicine and biochemistry, genetics, and molecular biology. Their research primarily focuses on molecular biology, pathology and forensic medicine, oncology, cancer research, and genetics.

Their work covers several main topics, including:

  • Cancer Genomics and Diagnostics
  • Lymphoma Diagnosis and Treatment
  • Genetic factors in colorectal cancer
  • Glioma Diagnosis and Treatment
  • Gastric Cancer Management and Outcomes
  • Viral-associated cancers and disorders
  • Genomic variations and chromosomal abnormalities

Bauke Ylstra has published frequently in notable scientific venues, with notable numbers of publications in:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Blood
  • Cancer Research
  • Nature Communications
  • Neuro-Oncology

Several recent papers highlight the scope of their research. These include:

  • Neoadjuvant Chemoradiotherapy Combined with Atezolizumab for Resectable Esophageal Adenocarcinoma: A Single-arm Phase II Feasibility Trial (PERFECT), 2021, Clinical Cancer Research
  • Molecular characterization of colorectal cancer related peritoneal metastatic disease, 2022, Nature Communications
  • Tumor-Educated Platelet RNA for the Detection and (Pseudo)progression Monitoring of Glioblastoma, 2020, Cell Reports Medicine
  • Chromosomal copy number heterogeneity predicts survival rates across cancers, 2021, Nature Communications
  • Clinical Validation of Whole Genome Sequencing for Cancer Diagnostics, 2021, Journal of Molecular Diagnostics

Coauthors frequently collaborating with Bauke Ylstra include:

  • Erik van Dijk
  • Daphne de Jong
  • Nicole C.T. van Grieken
  • Yongsoo Kim
  • Phylicia Stathi

Best Publications

  • Assembly of microarrays for genome-wide measurement of DNA copy number.

    Antoine M. Snijders;Norma Nowak;Richard Segraves;Stephanie Blackwood

  • Integrated Genomics Identifies Five Medulloblastoma Subtypes with Distinct Genetic Profiles, Pathway Signatures and Clinicopathological Features

    Marcel Kool;Jan Koster;Jens Bunt;Nancy E. Hasselt

  • RNA-Seq of Tumor-Educated Platelets Enables Blood-Based Pan-Cancer, Multiclass, and Molecular Pathway Cancer Diagnostics

    Myron G. Best;Nik Sol;Irsan Kooi;Jihane Tannous

  • Mismatch Repair Status and BRAF Mutation Status in Metastatic Colorectal Cancer Patients: A Pooled Analysis of the CAIRO, CAIRO2, COIN, and FOCUS Studies

    Sabine Venderbosch;Iris D Nagtegaal;Timothy S Maughan;Christopher G Smith

  • Quantitative mapping of amplicon structure by array CGH identifies CYP24 as a candidate oncogene.

    Donna G. Albertson;Bauke Ylstra;Richard Segraves;Colin Collins

  • Recruitment to the nuclear periphery can alter expression of genes in human cells.

    Lee E. Finlan;Duncan Sproul;Inga Thomson;Shelagh Boyle

  • Nontemplated Nucleotide Additions Distinguish the Small RNA Composition in Cells from Exosomes

    Danijela Koppers-Lalic;Michael Hackenberg;Irene V. Bijnsdorp;Monique A.J. van Eijndhoven

  • Molecular basis of bortezomib resistance: proteasome subunit beta5 (PSMB5) gene mutation and overexpression of PSMB5 protein

    Ruud Oerlemans;Niels E. Franke;Yehuda G. Assaraf;Jacqueline Cloos

  • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

    Ilari Scheinin;Daoud Sie;Henrik Bengtsson;Mark A. van de Wiel

  • Copy number signatures and mutational processes in ovarian carcinoma

    Geoff Macintyre;Teodora E. Goranova;Dilrini De Silva;Darren Ennis

  • Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures

    Catherine Naughton;Nicolaos Avlonitis;Samuel Corless;James G Prendergast

  • High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer.

    Suet F Chin;Andrew E Teschendorff;John C Marioni;Yanzhong Wang

  • IDH mutation status and role of WHO grade and mitotic index in overall survival in grade II-III diffuse gliomas

    Adriana Olar;Khalida M. Wani;Kristin D. Alfaro-Munoz;Lindsey E. Heathcock

  • Breast tumor copy number aberration phenotypes and genomic instability

    Jane Fridlyand;Antoine M Snijders;Bauke Ylstra;Bauke Ylstra;Hua Li

  • CGHcall: calling aberrations for array CGH tumor profiles

    Mark A. van de Wiel;Kyung In Kim;Sjoerd J. Vosse;Wessel N. van Wieringen

  • Genome-wide DNA copy number alterations in head and neck squamous cell carcinomas with or without oncogene-expressing human papillomavirus

    S J Smeets;B J M Braakhuis;S Abbas;P J F Snijders

  • Multiple putative oncogenes at the chromosome 20q amplicon contribute to colorectal adenoma to carcinoma progression

    B Carvalho;C Postma;S Mongera;E Hopmans

  • Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping

    Paula J P de Vree;Elzo de Wit;Mehmet Yilmaz;Monique van de Heijning

  • Microarray-based comparative genomic hybridization and its applications in human genetics.

    AE Oostlander;GA Meijer;B Ylstra

  • Human and mouse oligonucleotide-based array CGH

    Paul van den IJssel;Marianne Tijssen;Suet-Feung Chin;Paul P. Eijk

Frequent Co-Authors

Gerrit A. Meijer
Gerrit A. Meijer Netherlands Cancer Institute
Pieter Wesseling
Pieter Wesseling University of Amsterdam
Henk M.W. Verheul
Henk M.W. Verheul Radboud University
Iris D. Nagtegaal
Iris D. Nagtegaal Radboud University
Renske D.M. Steenbergen
Renske D.M. Steenbergen University of Amsterdam
Peter J.F. Snijders
Peter J.F. Snijders Vrije Universiteit Amsterdam
Chris J.L.M. Meijer
Chris J.L.M. Meijer Vrije Universiteit Amsterdam
Cornelis J. A. Punt
Cornelis J. A. Punt University of Amsterdam
Egbert F. Smit
Egbert F. Smit VU University Medical Center

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