D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Genetics D-index 57 Citations 34,559 102 World Ranking 2564 National Ranking 1124

Research.com Recognitions

Awards & Achievements

2005 - Fellow of the American Association for the Advancement of Science (AAAS)

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • DNA
  • Genome

His primary scientific interests are in Computational biology, Genetics, Human genome, Genome and Genomics. His Computational biology study frequently intersects with other fields, such as ENCODE. His ENCODE study which covers GENCODE that intersects with Functional genomics and Systems biology.

Gene and Sequence alignment are among the areas of Genetics where the researcher is concentrating his efforts. Arend Sidow has included themes like Chromatin, Sequence analysis, Leverage and DNA sequencing in his Genome study. His work on Personal Genome Project as part of general Genomics study is frequently linked to Sequence assembly, bridging the gap between disciplines.

His most cited work include:

  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (4297 citations)
  • An integrated encyclopedia of DNA elements in the human genome (2642 citations)
  • Genome sequence of the Brown Norway rat yields insights into mammalian evolution (1795 citations)

What are the main themes of his work throughout his whole career to date?

Arend Sidow mainly focuses on Genetics, Computational biology, Genome, Human genome and Gene. His Computational biology research is multidisciplinary, relying on both genomic DNA, Contig, ENCODE, Genomics and Ploidy. His studies deal with areas such as GENCODE and DNase-Seq as well as ENCODE.

Arend Sidow has researched Genomics in several fields, including ChIP-exo, Peak calling, Nanopore sequencing and Structural variant. The study incorporates disciplines such as Evolutionary biology and Phylogenetic tree in addition to Genome. His Human genome study combines topics from a wide range of disciplines, such as Annotation, Negative selection, Genetic variation and DNA.

He most often published in these fields:

  • Genetics (52.73%)
  • Computational biology (49.09%)
  • Genome (40.00%)

What were the highlights of his more recent work (between 2017-2021)?

  • Computational biology (49.09%)
  • Genome (40.00%)
  • Cancer (6.36%)

In recent papers he was focusing on the following fields of study:

His primary areas of study are Computational biology, Genome, Cancer, Contig and Personal genomics. His research integrates issues of Human genome, Genomics, Ploidy, Genetic variation and Haplotype in his study of Computational biology. Arend Sidow combines Human genome and Breakpoint in his research.

His Genome research includes elements of Microbiome, Isolation and Metagenomics. His work carried out in the field of Cancer brings together such families of science as Point mutation and DNA methylation. His Mutation research is included under the broader classification of Genetics.

Between 2017 and 2021, his most popular works were:

  • High-quality genome sequences of uncultured microbes by assembly of read clouds (53 citations)
  • Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival (42 citations)
  • HAPDeNovo: a haplotype-based approach for filtering and phasing de novo mutations in linked read sequencing data. (10 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • DNA
  • Genome

His primary areas of investigation include Computational biology, Genome, Human genome, Contig and Cancer. His Computational biology study combines topics in areas such as False positive paradox, Personal genomics, Genomics and Haplotype. His study in Genome focuses on Microbial genome in particular.

His Human genome study incorporates themes from DNA microarray, Genotype, Mutation and DNA sequencing. His Cancer research incorporates elements of Cancer research, Germline mutation, DNA methylation, Point mutation and Gene mutation. His research in Cancer research intersects with topics in Structural variation and Gene.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Ewan Birney;John A. Stamatoyannopoulos;Anindya Dutta;Roderic Guigó.
Nature (2007)

5709 Citations

The ENCODE (ENCyclopedia of DNA elements) Project

E. A. Feingold;P. J. Good;M. S. Guyer;S. Kamholz.
Science (2004)

2921 Citations

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham;Anshul Kundaje;Shelley F. Aldred;Patrick J. Collins.
PMC (2012)

2767 Citations

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

Richard A. Gibbs;George M. Weinstock;Michael L. Metzker;Donna M. Muzny.
Nature (2004)

2389 Citations

Identifying a high fraction of the human genome to be under selective constraint using GERP

Eugene V. Davydov;David L. Goode;Marina Sirota;Gregory M. Cooper.
PLOS Computational Biology (2010)

1919 Citations

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt;Georgi K. Marinov;Anshul Kundaje;Pouya Kheradpour.
Genome Research (2012)

1905 Citations

Architecture of the human regulatory network derived from ENCODE data

Mark B Gerstein;Anshul Kundaje;Manoj Hariharan;Stephen G Landt.
Nature (2012)

1553 Citations

Distribution and intensity of constraint in mammalian genomic sequence

Gregory M. Cooper;Eric A. Stone;George Asimenos;Eric D. Green.
Genome Research (2005)

1440 Citations

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

Richard M. Myers;John Stamatoyannopoulos;Michael Snyder;Ian Dunham.
PLOS Biology (2011)

1331 Citations

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA.

Michael Brudno;Chuong B. Do;Gregory M. Cooper;Michael F. Kim.
Genome Research (2003)

1300 Citations

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