Yasushi Ishihama

Overview

Best Publications

• Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

  Juri Rappsilber;Matthias Mann;Yasushi Ishihama;Yasushi Ishihama

  4500
  Citations

• Stop and Go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and lc/ms sample pretreatment in proteomics

  Juri Rappsilber;Yasushi Ishihama;Matthias Mann

  2838
  Citations

• Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein

  Yasushi Ishihama;Yoshiya Oda;Tsuyoshi Tabata;Toshitaka Sato

  2339
  Citations

• Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis

  Taishi Umezawa;Naoyuki Sugiyama;Masahide Mizoguchi;Shimpei Hayashi

  1235
  Citations

• The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

  Eric W. Deutsch;Attila Csordas;Zhi Sun;Andrew Jarnuczak

  902
  Citations

• Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry

  Edwin Lasonder;Edwin Lasonder;Yasushi Ishihama;Jens S. Andersen;Adriaan M. W. Vermunt

  857
  Citations

• Proteome-wide Analysis of Chaperonin-Dependent Protein Folding in Escherichia coli

  Michael J. Kerner;Dean J. Naylor;Yasushi Ishihama;Tobias Maier

  762
  Citations

• The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.

  Eric W. Deutsch;Nuno Bandeira;Nuno Bandeira;Vagisha Sharma;Yasset Pérez-Riverol

  748
  Citations

• Splicing factor SF3b as a target of the antitumor natural product pladienolide

  Yoshihiko Kotake;Koji Sagane;Takashi Owa;Yuko Mimori-Kiyosue

  703
  Citations

• Phase transfer surfactant-aided trypsin digestion for membrane proteome analysis.

  Takeshi Masuda;Masaru Tomita;Yasushi Ishihama

  660
  Citations

• PINK1-mediated phosphorylation of the Parkin ubiquitin-like domain primes mitochondrial translocation of Parkin and regulates mitophagy

  Kahori Shiba-Fukushima;Yuzuru Imai;Shigeharu Yoshida;Yasushi Ishihama

  593
  Citations

• Protein abundance profiling of the Escherichia coli cytosol

  Yasushi Ishihama;Yasushi Ishihama;Thorsten Schmidt;Juri Rappsilber;Juri Rappsilber;Matthias Mann;Matthias Mann

  572
  Citations

• jPOSTrepo: an international standard data repository for proteomes.

  Shujiro Okuda;Yu Watanabe;Yuki Moriya;Shin Kawano

  560
  Citations

• Phosphopeptide Enrichment by Aliphatic Hydroxy Acid-modified Metal Oxide Chromatography for Nano-LC-MS/MS in Proteomics Applications

  Naoyuki Sugiyama;Takeshi Masuda;Kosaku Shinoda;Akihiro Nakamura

  521
  Citations

• Genetics and Phosphoproteomics Reveal a Protein Phosphorylation Network in the Abscisic Acid Signaling Pathway in Arabidopsis thaliana

  Taishi Umezawa;Naoyuki Sugiyama;Naoyuki Sugiyama;Fuminori Takahashi;Jeffrey C. Anderson

  480
  Citations

• Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis

  Naoyuki Sugiyama;Hirofumi Nakagami;Keiichi Mochida;Arsalan Daudi

  453
  Citations

• Large-Scale Comparative Phosphoproteomics Identifies Conserved Phosphorylation Sites in Plants

  Hirofumi Nakagami;Naoyuki Sugiyama;Keiichi Mochida;Arsalan Daudi

  433
  Citations

• Microcolumns with self-assembled particle frits for proteomics.

  Yasushi Ishihama;Juri Rappsilber;Jens S Andersen;Matthias Mann

  381
  Citations

• Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics

  Tamar Geiger;Jacek R Wisniewski;Juergen Cox;Sara Zanivan

  341
  Citations

• Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics.

  Yasushi Ishihama;Juri Rappsilber;Matthias Mann

  340
  Citations