2026 Yu-Ju Chen: Biology and Biochemistry Researcher – H-Index, Publications & Awards

Discipline name	D-Index	World Ranking	Current World Ranking	National Ranking	Current National Ranking	Publications	Citations
Biology and Biochemistry	64	9915	9150	46	45	236	10835

Overview

Yu-Ju Chen is affiliated with Academia Sinica in Taiwan and has contributed extensively to the fields of Biochemistry, Genetics and Molecular Biology, with a particular focus on Molecular Biology and Spectroscopy. Their research spans multiple aspects of molecular and cellular science, including Pulmonary and Respiratory Medicine and Immunology.

The scientist's work primarily centers on advanced proteomics and mass spectrometry techniques. Their main topics of research include:

Advanced Proteomics Techniques and Applications
Mass Spectrometry Techniques and Applications
Metabolomics and Mass Spectrometry Studies
Glycosylation and Glycoproteins Research
Advanced biosensing and bioanalysis techniques
Advanced Biosensing Techniques and Applications
Lung Cancer Treatments and Mutations

Frequent publication venues for Yu-Ju Chen include:

PROTEOMICS
Molecular & Cellular Proteomics
Journal of Proteome Research
Chemistry - A European Journal
Nature Communications

The researcher has collaborated often with several co-authors, including:

Stuart J. Cordwell
Alexey I. Nesvizhskii
Terence Chuen Wai Poon
Ruedi Aebersold
Henning Hermjakob

Notable recent papers authored or co-authored by Yu-Ju Chen include:

Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression, 2020, Cell
Streamlined single-cell proteomics by an integrated microfluidic chip and data-independent acquisition mass spectrometry, 2022, Nature Communications
Advances in data-independent acquisition mass spectrometry towards comprehensive digital proteome landscape, 2022, Mass Spectrometry Reviews
Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies, 2020, Nature Communications
A data-independent acquisition-based global phosphoproteomics system enables deep profiling, 2021, Nature Communications

Best Publications

Cancer-associated fibroblasts regulate the plasticity of lung cancer stemness via paracrine signalling.

Wan-Jiun Chen;Chao-Chi Ho;Yih-Leong Chang;Hsuan-Yu Chen

396
Citations
Identification of Downstream Components of Ubiquitin-Conjugating Enzyme PHOSPHATE2 by Quantitative Membrane Proteomics in Arabidopsis Roots

Teng Kuei Huang;Chia Li Han;Shu I. Lin;Yu Ju Chen;Yu Ju Chen

271
Citations
Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression.

Yi Ju Chen;Theodoros I. Roumeliotis;Ya Hsuan Chang;Ching Tai Chen

254
Citations
Site-Specific Protein Modification through CuI-Catalyzed 1,2,3-Triazole Formation and Its Implementation in Protein Microarray Fabrication†

Po-Chiao Lin;Po-Chiao Lin;Shau-Hua Ueng;Mei-Chun Tseng;Jia-Ling Ko;Jia-Ling Ko

218
Citations
Functionalized magnetic nanoparticles for small-molecule isolation, identification, and quantification.

Po-Chiao Lin;Mei-Chun Tseng;An-Kai Su;Yu-Ju Chen

183
Citations
Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics

Chia Feng Tsai;Yi Ting Wang;Hsin Yung Yen;Chih Chiang Tsou

178
Citations
Ethylene glycol-protected magnetic nanoparticles for a multiplexed immunoassay in human plasma.

Po-Chiao Lin;Po-Chiao Lin;Po-Hung Chou;Shu-Hua Chen;Hsin-Kai Liao

174
Citations
A Multiplexed Quantitative Strategy for Membrane Proteomics Opportunities for Mining Therapeutic Targets for Autosomal Dominant Polycystic Kidney Disease

Chia Li Han;Chih Wei Chien;Wen Cheng Chen;Yet Ran Chen

156
Citations
The inhibition of osteogenesis with human bone marrow mesenchymal stem cells by CdSe/ZnS quantum dot labels

Shu-Chen Hsieh;Fung-Fang Wang;Ching-Shih Lin;Yu-Ju Chen

155
Citations
Immobilized metal affinity chromatography revisited: pH/acid control toward high selectivity in phosphoproteomics.

Chia-Feng Tsai;Yi-Ting Wang;Yet-Ran Chen;Chen-Yu Lai

155
Citations
Solvation of 7-azaindole in alcohols and water : evidence for concerted, excited-state, double-proton transfer in alcohols

Y. Chen;F. Gai;Jacob W. Petrich

152
Citations
Plasma proteome of severe acute respiratory syndrome analyzed by two-dimensional gel electrophoresis and mass spectrometry

Jenn-Han Chen;Yu-Wang Chang;Chen-Wen Yao;Tzong-Shi Chiueh

151
Citations
Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography.

Chia-Feng Tsai;Chuan-Chih Hsu;Jo-Nan Hung;Yi-Ting Wang;Yi-Ting Wang

143
Citations
GSK3β controls epithelial–mesenchymal transition and tumor metastasis by CHIP-mediated degradation of Slug

Shih-Han Kao;Wen-Lung Wang;Chi-Yuan Chen;Yih-Leong Chang

142
Citations
IDEAL-Q, an Automated Tool for Label-free Quantitation Analysis Using an Efficient Peptide Alignment Approach and Spectral Data Validation

Chih-Chiang Tsou;Chia-Feng Tsai;Ying-Hao Tsui;Putty-Reddy Sudhir

139
Citations
Production of High-Quality Particulate Methane Monooxygenase in High Yields from Methylococcus capsulatus (Bath) with a Hollow-Fiber Membrane Bioreactor

Steve S.-F. Yu;Kelvin H.-C. Chen;Kelvin H.-C. Chen;Mandy Y.-H. Tseng;Mandy Y.-H. Tseng;Yane-Shih Wang

129
Citations
Globotriose-Functionalized Gold Nanoparticles as Multivalent Probes for Shiga-like Toxin

Yuh Yih Chien;Yuh Yih Chien;Mi Dan Jan;Avijit Kumar Adak;Hsiao Chien Tzeng

125
Citations
Interaction modes and approaches to glycopeptide and glycoprotein enrichment

Chen-Chun Chen;Chen-Chun Chen;Wan-Chih Su;Wan-Chih Su;Bao-Yu Huang;Yu-Ju Chen

125
Citations
Multi-Q: A fully automated tool for multiplexed protein quantitation

Wen Ting Lin;Wei Neng Hung;Yi Hwa Yian;Kun Pin Wu

123
Citations
Quantitative proteomic analysis of metabolic regulation by copper ions in Methylococcus capsulatus (Bath)

Wei-Chun Kao;Wei-Chun Kao;Yet-Ran Chen;Eugene C. Yi;Hookeun Lee

119
Citations