World's Best Scientists 2026 revealed!

D-Index & Metrics

Biology and Biochemistry

D-Index
61
Citations
36227
World Ranking
11082
National Ranking
4791

Overview

Sridhar Hannenhalli is affiliated with the National Institutes of Health in the United States. Their research spans several fields, primarily within biochemistry, genetics, and molecular biology, with a significant emphasis also in medicine.

The main fields of study in their work include:

  • Biochemistry, Genetics and Molecular Biology
  • Medicine

Within these fields, the main subfields of study covered in Hannenhalli's publications are:

  • Molecular Biology
  • Cancer Research
  • Oncology
  • Immunology
  • Genetics

Their research topics address a range of genomic and transcriptomic aspects, including:

  • Single-cell and spatial transcriptomics
  • Cancer Genomics and Diagnostics
  • Bioinformatics and Genomic Networks
  • Genomics and Chromatin Dynamics
  • RNA Research and Splicing
  • RNA modifications and cancer
  • Epigenetics and DNA Methylation

Hannenhalli has contributed to several recent papers, including:

  • Big data in basic and translational cancer research, 2022, Nature Reviews. Cancer
  • Genetically engineered myeloid cells rebalance the core immune suppression program in metastasis, 2021, Cell
  • Synthetic lethality-mediated precision oncology via the tumor transcriptome, 2021, Cell
  • Predicting tissue-specific gene expression from whole blood transcriptome, 2021, Science Advances
  • An Integrated Epigenomic and Transcriptomic Map of Mouse and Human αβ T Cell Development, 2020, Immunity

The scientist has frequently published in the following venues:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Faculty Opinions - Post-Publication Peer Review of the Biomedical Literature
  • Cancer Research
  • Science Advances
  • PLoS Genetics

Collaborations have been a part of their research, with frequent co-authors including:

  • Vishaka Gopalan
  • Arashdeep Singh
  • Piyush Agrawal
  • Chi-Ping Day
  • Eytan Ruppin

Best Publications

  • The Sequence of the Human Genome

    J. Craig Venter;Mark D. Adams;Eugene W. Myers;Peter W. Li

  • Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals

    Sridhar Hannenhalli;Pavel A. Pevzner

  • The evolution of Fox genes and their role in development and disease.

    Sridhar Hannenhalli;Klaus H. Kaestner

  • Genome-wide analysis of retroviral DNA integration

    Frederic Bushman;Mary Lewinski;Angela Ciuffi;Stephen Barr

  • Transforming men into mice (polynomial algorithm for genomic distance problem)

    S. Hannenhalli;P.A. Pevzner

  • Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection

    Mary K Lewinski;Masahiro Yamashita;Michael Emerman;Angela Ciuffi

  • Analysis and Prediction of Functional Sub-types from Protein Sequence Alignments

    Sridhar S. Hannenhalli;Robert B. Russell

  • Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription

    M. K. Lewinski;D. Bisgrove;P. Shinn;Hongwu Chen

  • RNA-Seq Identifies Novel Myocardial Gene Expression Signatures of Heart Failure

    Yichuan Liu;Michael Morley;Jeffrey Brandimarto;Sridhar Hannenhalli

  • 1.375-Approximation Algorithm for Sorting by Reversals

    Piotr Berman;Sridhar Hannenhalli;Marek Karpinski

  • Whole-genome shotgun assembly and comparison of human genome assemblies

    Sorin Istrail;Granger G. Sutton;Liliana Florea;Aaron L. Halpern

  • Polynomial-time algorithm for computing translocation distance between genomes

    Sridhar Hannenhalli

  • Selection of target sites for mobile DNA integration in the human genome.

    Charles C Berry;Sridhar Hannenhalli;Jeremy Leipzig;Frederic D. Bushman

  • Transcriptional Genomics Associates FOX Transcription Factors With Human Heart Failure

    Sridhar Hannenhalli;Mary E. Putt;Joan M. Gilmore;Junwen Wang

  • Urea Cycle Dysregulation Generates Clinically Relevant Genomic and Biochemical Signatures

    Joo Sang Lee;Joo Sang Lee;Lital Adler;Hiren Karathia;Narin Carmel

  • Fast Sorting by Reversal

    Piotr Berman;Sridhar Hannenhalli

  • Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic cardiac myocyte proliferation

    Chinmay M. Trivedi;Wenting Zhu;Qiaohong Wang;Cheng Jia

  • Genome Sequence Comparison and Scenarios for Gene Rearrangements: A Test Case

    Sridhar Hannenhalli;Colombe Chappey;Eugene V. Koonin;Pavel A. Pevzner

  • Why Transcription Factor Binding Sites Are Ten Nucleotides Long

    Alexander J Stewart;Sridhar Hannenhalli;Joshua B Plotkin

  • Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site

    Selection K. Lewinski;Masahiro Yamashita;Michael Emerman;Angela Ciuffi

Frequent Co-Authors

Eytan Ruppin
Eytan Ruppin National Institutes of Health
Pavel A. Pevzner
Pavel A. Pevzner University of California, San Diego
Frederic D. Bushman
Frederic D. Bushman University of Pennsylvania
Kenneth B. Margulies
Kenneth B. Margulies University of Pennsylvania
Euan A. Ashley
Euan A. Ashley Stanford University
J. Silvio Gutkind
J. Silvio Gutkind University of California, San Diego
Cyril H. Benes
Cyril H. Benes Harvard University
Joshua B. Plotkin
Joshua B. Plotkin University of Pennsylvania
Edward E. Morrisey
Edward E. Morrisey University of Pennsylvania
Hakon Hakonarson
Hakon Hakonarson Children's Hospital of Philadelphia

If you think any of the details on this page are incorrect, let us know.

Report an issue

We appreciate your kind effort to assist us to improve this page, it would be helpful providing us with as much detail as possible in the text box below:

Best Scientists Citing Sridhar Hannenhalli

Trending Scientists

Recently Published Articles