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Engineering and Technology

D-Index
61
Citations
140027
World Ranking
1975
National Ranking
129

Overview

Rodrigo Lopez is affiliated with the European Bioinformatics Institute in the United Kingdom. Their research spans multiple domains including computer science and biochemistry, genetics, and molecular biology, with a focus on molecular biology, artificial intelligence, and related subfields.

The scientific work of Rodrigo Lopez covers a variety of topics, including:

  • Genomics and Phylogenetic Studies
  • Advanced Proteomics Techniques and Applications
  • Scientific Computing and Data Management
  • Bacteriophages and microbial interactions
  • Machine Learning in Bioinformatics
  • Distributed and Parallel Computing Systems
  • Software System Performance and Reliability

Their publication record includes contributions in venues such as:

  • Nucleic Acids Research
  • Bioinformatics
  • Current Protocols
  • Journal of Orthopaedic Surgery and Research
  • Journal of Artificial Intelligence Research

Among several publications, select recent papers authored or co-authored by Rodrigo Lopez include:

  • UniProt: the universal protein knowledgebase in 2021, 2020, Nucleic Acids Research
  • Search and sequence analysis tools services from EMBL-EBI in 2022, 2022, Nucleic Acids Research
  • The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024, 2024, Nucleic Acids Research
  • The European Nucleotide Archive in 2020, 2020, Nucleic Acids Research
  • The European Nucleotide Archive in 2021, 2021, Nucleic Acids Research

Frequent collaborators in Rodrigo Lopez's research efforts include:

  • Fábio Madeira
  • Nandana Madhusoodanan
  • Guy Cochrane
  • Matt Pearce
  • Adrian R. Tivey

Best Publications

  • Clustal W and Clustal X version 2.0

    M.A. Larkin;G. Blackshields;N.P. Brown;R. Chenna

  • Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

    Fabian Sievers;Andreas Wilm;David Dineen;Toby J Gibson

  • InterProScan 5: genome-scale protein function classification

    Philip Jones;David Binns;Hsin-Yu Chang;Matthew Fraser

  • UniProt: A hub for protein information

    Alex Bateman;Maria Jesus Martin;Claire O'Donovan;Michele Magrane

  • UniProt: the Universal Protein knowledgebase

    Rolf Apweiler;Amos Bairoch;Cathy H. Wu;Winona C. Barker

  • UniProt: the universal protein knowledgebase in 2021

    Alex Bateman;Maria-Jesus Martin;Sandra Orchard

  • Multiple sequence alignment with the Clustal series of programs

    Ramu Chenna;Hideaki Sugawara;Tadashi Koike;Rodrigo Lopez

  • The Universal Protein Resource (UniProt)

    Amos Bairoch;Rolf Apweiler;Cathy H. Wu;Winona C. Barker

  • InterProScan: protein domains identifier.

    Emmanuel Quevillon;Ville Silventoinen;Sharmila Pillai;Nicola Harte

  • Activities at the Universal Protein Resource (UniProt)

    R Apweiler;A Bateman;MJ Martin;C O'Donovan

  • InterPro: the integrative protein signature database

    Sarah Hunter;Rolf Apweiler;Teresa K. Attwood;Amos Bairoch

  • A new bioinformatics analysis tools framework at EMBL–EBI

    Mickael Goujon;Hamish McWilliam;Weizhong Li;Franck Valentin

  • The InterPro Database, 2003 brings increased coverage and new features

    Nicola J Mulder;Rolf Apweiler;Teresa K Attwood;Amos Marc Bairoch

  • InterPro in 2017-beyond protein family and domain annotations

    Robert D. Finn;Teresa K. Attwood;Patricia C. Babbitt;Alex Bateman

  • InterPro in 2019: improving coverage, classification and access to protein sequence annotations.

    Alex L. Mitchell;Teresa K. Attwood;Patricia C. Babbitt;Matthias Blum

  • The InterPro protein families database: the classification resource after 15 years

    Alex L. Mitchell;Hsin-Yu Chang;Louise C. Daugherty;Matthew Fraser

  • The Universal Protein Resource (UniProt): an expanding universe of protein information

    Cathy H. Wu;Rolf Apweiler;Amos Bairoch;Darren A. Natale

  • The InterPro database, an integrated documentation resource for protein families, domains and functional sites

    Rolf Apweiler;Terri K. Attwood;Amos Bairoch;Alex Bateman

  • InterPro in 2011: new developments in the family and domain prediction database

    Sarah Hunter;Philip Jones;Alex Mitchell;Rolf Apweiler

  • The EMBL-EBI bioinformatics web and programmatic tools framework

    Weizhong Li;Andrew Peter Cowley;Mahmut Uludag;Tamer Gur

  • The EMBL Nucleotide Sequence Database

    Tamara Kulikova;Philippe Aldebert;Nicola Althorpe;Wendy Baker

  • InterPro, progress and status in 2005

    Nicola J. Mulder;Rolf Apweiler;Teresa K. Attwood;Amos Bairoch

  • InterPro--an integrated documentation resource for protein families, domains and functional sites

    Rolf Apweiler;Terri K. Attwood;Amos Bairoch;Alex Bateman

  • InterPro: An integrated documentation resource for protein families, domains and functional sites

    Nicola J. Mulder;Rolf Apweiler;Terri K. Attwood;Amos Bairoch

Frequent Co-Authors

Rolf Apweiler
Rolf Apweiler European Bioinformatics Institute
Alex Bateman
Alex Bateman European Bioinformatics Institute
Nicole Redaschi
Nicole Redaschi Swiss Institute of Bioinformatics
Teresa K. Attwood
Teresa K. Attwood University of Manchester
Cathy H. Wu
Cathy H. Wu University of Delaware
Amos Marc Bairoch
Amos Marc Bairoch Swiss Institute of Bioinformatics
Guy Cochrane
Guy Cochrane European Bioinformatics Institute
Peer Bork
Peer Bork European Molecular Biology Laboratory
Ivica Letunic
Ivica Letunic European Bioinformatics Institute
Daniel Kahn
Daniel Kahn Claude Bernard University Lyon 1

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