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Martin Vingron

Martin Vingron

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Genetics
Germany
2024

D-Index & Metrics

Genetics

D-Index
95
Citations
49119
World Ranking
885
National Ranking
72

Molecular Biology

D-Index
95
Citations
49119
World Ranking
622
National Ranking
52

Research.com Recognitions

  • 2024 - Research.com Genetics in Germany Leader Award
  • 2023 - Research.com Genetics in Germany Leader Award
  • 2014 - Member of Academia Europaea
  • 2012 - Fellow of the International Society for Computational Biology
  • 2004 - German National Academy of Sciences Leopoldina - Deutsche Akademie der Naturforscher Leopoldina – Nationale Akademie der Wissenschaften Informatics
  • 2004 - Max Planck Research Award Bioinformatics

Overview

Martin Vingron is affiliated with the Max Planck Society in Germany and has made contributions primarily in the field of Biochemistry, Genetics, and Molecular Biology. Their research work spans various subfields, including Molecular Biology, Plant Science, Genetics, Biophysics, and Cell Biology.

The scientist's research covers several main topics such as:

  • Genomics and Chromatin Dynamics
  • RNA Research and Splicing
  • Single-cell and spatial transcriptomics
  • Genomics and Phylogenetic Studies
  • Chromosomal and Genetic Variations
  • RNA and protein synthesis mechanisms
  • Gene expression and cancer classification

Martin Vingron has published in frequent venues including:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Bioinformatics
  • Nucleic Acids Research
  • Zenodo (CERN European Organization for Nuclear Research)
  • Nature Cell Biology

Notable recent papers by Martin Vingron include:

  • SVIM-asm: structural variant detection from haploid and diploid genome assemblies, 2020, Bioinformatics
  • Hi-C Identifies Complex Genomic Rearrangements and TAD-Shuffling in Developmental Diseases, 2020, The American Journal of Human Genetics
  • Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements, 2022, Nature Genetics
  • Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells, 2022, Nature Cell Biology
  • The mole genome reveals regulatory rearrangements associated with adaptive intersexuality, 2020, Science

The scientist has collaborated frequently with co-authors such as Stefan Mundlos, Stefan A. Haas, Elzbieta Gralinska, Robert Schöpflin, and Tobias Zehnder.

Martin Vingron has contributed to the publication of a book titled Computational Advances in Bio and Medical Sciences, released in 2021 by Springer Science+Business Media.

Throughout their career, Martin Vingron has received several awards, including:

  • Member of Academia Europaea, 2014
  • Fellow of the International Society for Computational Biology, 2012
  • Max Planck Research Award for Bioinformatics, 2004
  • Membership in the German National Academy of Sciences Leopoldina - Deutsche Akademie der Naturforscher Leopoldina - Nationale Akademie der Wissenschaften for Informatics, 2004

Best Publications

  • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

    Alvis Brazma;Pascal Hingamp;John Quackenbush;Gavin Sherlock

  • Variance stabilization applied to microarray data calibration and to the quantification of differential expression.

    Wolfgang Huber;Anja von Heydebreck;Holger Sültmann;Annemarie Poustka

  • TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.

    Heiko A. Schmidt;Korbinian Strimmer;Martin Vingron;Arndt von Haeseler

  • A gene expression map of Arabidopsis thaliana development

    Markus Schmid;Timothy S Davison;Stefan R Henz;Utz J Pape

  • Comprehensive genomic profiles of small cell lung cancer

    Julie George;Jing Shan Lim;Se Jin Jang;Yupeng Cun

  • Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels

    Marcel H. Schulz;Marcel H. Schulz;Marcel H. Schulz;Daniel R. Zerbino;Daniel R. Zerbino;Martin Vingron;Ewan Birney

  • A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

    Marc Sultan;Marcel H. Schulz;Marcel H. Schulz;Hugues Richard;Alon Magen

  • IntAct: an open source molecular interaction database

    Henning Hermjakob;Luisa Montecchi-Palazzi;Chris Lewington;Sugath Mudali

  • Histone modification levels are predictive for gene expression

    Rosa Karlić;Ho-Ryun Chung;Julia Lasserre;Kristian Vlahoviček

  • Formation of new chromatin domains determines pathogenicity of genomic duplications

    Martin Franke;Martin Franke;Daniel M. Ibrahim;Guillaume Andrey;Wibke Schwarzer

  • Ontologizer 2.0—a multifunctional tool for GO term enrichment analysis and data exploration

    Sebastian Bauer;Steffen Grossmann;Martin Vingron;Peter N. Robinson

  • The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery

    Hendrik G. Stunnenberg;Martin Hirst

  • T cells become licensed in the lung to enter the central nervous system

    Francesca Odoardi;Christopher Sie;Kristina Streyl;Vijay K. Ulaganathan

  • The Translational Landscape of the Human Heart

    Sebastiaan van Heesch;Franziska Witte;Valentin Schneider-Lunitz;Jana F. Schulz

  • Homology of 54K protein of signal-recognition particle, docking protein and two E. coli proteins with putative GTP-binding domains

    Karin Römisch;Jane Webb;Joachim Herz;Siegfried Prehn

  • Correspondence analysis applied to microarray data

    Kurt Fellenberg;Nicole C. Hauser;Benedikt Brors;Albert Neutzner

  • Improved detection of overrepresentation of Gene-Ontology annotations with parent–child analysis

    Steffen Grossmann;Sebastian Bauer;Peter N. Robinson;Martin Vingron

  • Plant nitric oxide synthase: a never-ending story?

    Tomasz Zemojtel;Andreas Fröhlich;M. Cristina Palmieri;Mateusz Kolanczyk

  • Modeling amino acid replacement.

    Tobias Müller;Martin Vingron

  • BLUEPRINT to decode the epigenetic signature written in blood

    David Adams;Lucia Altucci;Stylionos E. Antonarakis;Juan Ballesteros

Frequent Co-Authors

Stefan A. Haas
Stefan A. Haas Max Planck Society
Stefan Mundlos
Stefan Mundlos Max Planck Society
Hans Lehrach
Hans Lehrach Max Planck Society
Bernd Timmermann
Bernd Timmermann Max Planck Society
Wolfgang Huber
Wolfgang Huber European Bioinformatics Institute
Jörg D. Hoheisel
Jörg D. Hoheisel German Cancer Research Center
Norbert Hubner
Norbert Hubner Max Delbrück Center for Molecular Medicine
Christoph Dieterich
Christoph Dieterich University Hospital Heidelberg
Stuart A. Cook
Stuart A. Cook Duke NUS Graduate Medical School
Axel Visel
Axel Visel Lawrence Berkeley National Laboratory

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