James P. Balhoff

Best Publications

• The Gene Ontology resource: enriching a GOld mine

  Seth Carbon;Eric Douglass;Benjamin M Good

  3766
  Citations

• The Gene Ontology knowledgebase in 2023

  Unknown

  2683
  Citations

• Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources

  Sebastian Köhler;Leigh Carmody;Nicole A. Vasilevsky;Julius O. B. Jacobsen

  715
  Citations

• The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.

  Christopher J. Mungall;Julie A. McMurry;Sebastian Köhler;James P. Balhoff

  461
  Citations

• The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

  Unknown

  258
  Citations

• Finding Our Way through Phenotypes.

  Andrew R. Deans;Suzanna E. Lewis;Eva Huala;Salvatore S. Anzaldo

  229
  Citations

• OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.

  Rebecca C. Jackson;Nicolas Matentzoglu;James A. Overton;Randi Vita

  206
  Citations

• ROBOT: A Tool for Automating Ontology Workflows.

  Rebecca C. Jackson;James P. Balhoff;Eric Douglass;Nomi L. Harris

  183
  Citations

• Time to change how we describe biodiversity

  Unknown

  174
  Citations

• Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon:

  Melissa A Haendel;James P Balhoff;James P Balhoff;Frederic B Bastian;Frederic B Bastian;David C Blackburn

  171
  Citations

• Mondo: Unifying diseases for the world, by the world

  Unknown

  125
  Citations

• Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.

  Paul D. Thomas;David P. Hill;Huaiyu Mi;David Osumi-Sutherland

  124
  Citations

• Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature

  Wasila M Dahdul;James P Balhoff;James P Balhoff;Jeffrey Engeman;Terry Grande

  112
  Citations

• The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age

  Wasila M. Dahdul;John G. Lundberg;Peter E. Midford;Peter E. Midford;James P. Balhoff;James P. Balhoff

  112
  Citations

• NeXML: Rich, extensible, and verifiable representation of comparative data and metadata

  Rutger A. Vos;James P. Balhoff;James P. Balhoff;Jason A. Caravas;Mark T. Holder

  110
  Citations

• Phenex: ontological annotation of phenotypic diversity.

  James P Balhoff;James P Balhoff;Wasila M Dahdul;Wasila M Dahdul;Cartik R Kothari;Cartik R Kothari;Hilmar Lapp

  109
  Citations

• KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

  Justin T. Reese;Deepak R. Unni;Tiffany J. Callahan;Luca Cappelletti

  93
  Citations

• An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

  Cecilia N. Arighi;Ben Carterette;K. Bretonnel Cohen;Martin Krallinger

  92
  Citations

• A hymenopterists' guide to the Hymenoptera Anatomy Ontology: Utility, clarification, and future directions

  Katja C. Seltmann;Katja C. Seltmann;Matthew J. Yoder;Matthew J. Yoder;István Mikó;István Mikó;Mattias Forshage

  89
  Citations

• Navigating the phenotype frontier: The Monarch Initiative

  Julie A. McMurry;Sebastian Köhler;Nicole L. Washington;James P. Balhoff

  79
  Citations