World's Best Scientists 2026 revealed!

D-Index & Metrics

Biology and Biochemistry

D-Index
54
Citations
12367
World Ranking
15506
National Ranking
623

Overview

Daniel Gautheret is affiliated with the University of Paris-Saclay in France, specializing primarily in the fields of Biochemistry, Genetics and Molecular Biology, as well as Medicine. Their research spans molecular biology and its applications in cancer research and related medical fields.

The scientist's main fields of study include:

  • Biochemistry, Genetics and Molecular Biology
  • Medicine

Within these fields, their work engages with key subfields such as:

  • Molecular Biology
  • Cancer Research
  • Oncology
  • Infectious Diseases
  • Pulmonary and Respiratory Medicine

Daniel Gautheret's research focuses on multiple topics, covering a broad spectrum involving RNA and cancer, genomics, and molecular mechanisms relevant to oncology:

  • RNA modifications and cancer
  • Genomics and Phylogenetic Studies
  • Cancer Genomics and Diagnostics
  • Cancer-related molecular mechanisms research
  • Cancer Immunotherapy and Biomarkers
  • RNA Research and Splicing
  • RNA and protein synthesis mechanisms

The scientist has contributed frequently to various publication venues, indicating the platforms where most of their research appears. These include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Cancer Research
  • Bioinformatics
  • RNA Biology
  • Clinical Cancer Research

Collaborations have been a part of Daniel Gautheret's research output, including repeated partnerships with several co-authors:

  • Haoliang Xue
  • Claire Toffano-Nioche
  • Benjamin Besse
  • Antoine Lainé
  • Camille Marchet

Representative recent publications reflect the scope and diversity of the scientist's work:

  • "Rfam 14: expanded coverage of metagenomic, viral and microRNA families," 2020, Nucleic Acids Research
  • "Applications of single-cell and bulk RNA sequencing in onco-immunology," 2021, European Journal of Cancer
  • "REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets," 2020, Bioinformatics
  • "Integrative Pan-Cancer Genomic and Transcriptomic Analyses of Refractory Metastatic Cancer," 2023, Cancer Discovery
  • "Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation," 2020, PLANT PHYSIOLOGY

Best Publications

  • CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.

    David Couvin;Aude Bernheim;Aude Bernheim;Claire Toffano-Nioche;Marie Touchon;Marie Touchon

  • Patterns of Variant Polyadenylation Signal Usage in Human Genes

    Emmanuel Beaudoing;Susan Freier;Jacqueline R. Wyatt;Jean-Michel Claverie

  • Rfam 14: expanded coverage of metagenomic, viral and microRNA families.

    Ioanna Kalvari;Eric P Nawrocki;Nancy Ontiveros-Palacios;Joanna Argasinska

  • RNAMotif, an RNA secondary structure definition and search algorithm

    Thomas J. Macke;David J. Ecker;Robin R. Gutell;Daniel Gautheret

  • Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles

    Daniel Gautheret;André Lambert

  • The genome sequence of the model ascomycete fungus Podospora anserina

    Eric Espagne;Olivier Lespinet;Fabienne Malagnac;Fabienne Malagnac;Corinne Da Silva

  • Novel Selenoproteins Identified in Silico andin Vivo by Using a Conserved RNA Structural Motif

    Alain Lescure;Daniel Gautheret;Philippe Carbon;Alain Krol

  • ARNold: a web tool for the prediction of Rho-independent transcription terminators.

    Magali Naville;Adrien Ghuillot-Gaudeffroy;Antonin Marchais;Daniel Gautheret

  • Acquired initiating mutations in early hematopoietic cells of CLL patients

    Frederik Damm;Frederik Damm;Elena Mylonas;Elena Mylonas;Adrien Cosson;Adrien Cosson;Kenichi Yoshida

  • The combination of symbolic and numerical computation for three-dimensional modeling of RNA.

    Francois Major;Marcel Turcotte;Daniel Gautheret;Guy Lapalme

  • Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data.

    Emmanuel Beaudoing;Daniel Gautheret

  • Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

    Chantal Bohn;Candice Rigoulay;Svetlana Chabelskaya;Cynthia Mira Sharma

  • Gene structure, expression pattern, and biological activity of mouse killer cell activating receptor-associated protein (KARAP)/DAP-12.

    Elena Tomasello;Lucia Olcese;Frédéric Vély;Christophe Geourgeon

  • Sequence determinants in human polyadenylation site selection

    Matthieu Legendre;Daniel Gautheret

  • Alternate Polyadenylation in Human mRNAs: A Large-Scale Analysis by EST Clustering

    Daniel Gautheret;Olivier Poirot;Fabrice Lopez;Stéphane Audic

  • A major family of motifs involving G.A mismatches in ribosomal RNA.

    Daniel Gautheret;Danielle Konings;Robin R. Gutell

  • RNAML: a standard syntax for exchanging RNA information.

    Allison Waugh;Patrick Gendron;Russ Altman;James W. Brown

  • Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA.

    Daniel Gautheret;Francois Major;Robert Cedergren

  • G.U base pairing motifs in ribosomal RNA.

    Daniel Gautheret;Danielle Konings;Robin R. Gutell

  • Nonsense-Mediated Decay Restricts LncRNA Levels in Yeast Unless Blocked by Double-Stranded RNA Structure

    Maxime Wery;Marc Descrimes;Nicolas Vogt;Anne-Sophie Dallongeville

Frequent Co-Authors

Robert Cedergren
Robert Cedergren University of Montreal
Stefan Michiels
Stefan Michiels University of Paris-Saclay
Guy Lapalme
Guy Lapalme University of Montreal
Robin R. Gutell
Robin R. Gutell The University of Texas at Austin
William Vainchenker
William Vainchenker Institut Gustave Roussy
Martin Crespi
Martin Crespi University of Paris-Saclay
Pierre Boudry
Pierre Boudry French Research Institute for Exploitation of the Sea
Olivier Bernard
Olivier Bernard University of Paris-Saclay
Nathalie Droin
Nathalie Droin Institut Gustave Roussy
Jean-Michel Claverie
Jean-Michel Claverie Aix-Marseille University

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