Alice C. McHardy

Overview

Best Publications

• The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes

  Ross Overbeek;Tadhg P. Begley;Ralph M. Butler;Jomuna Choudhuri

  2386
  Citations

• Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.

  Falk Warnecke;Peter Luginbühl;Natalia Ivanova;Majid Ghassemian

  1522
  Citations

• Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment.

  Jonas Schulte-Schrepping;Nico Reusch;Daniela Paclik;Kevin Baßler

  1496
  Citations

• Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

  Davide Bulgarelli;Davide Bulgarelli;Ruben Garrido-Oter;Ruben Garrido-Oter;Philipp C. Münch;Aaron Weiman

  1415
  Citations

• Functional overlap of the Arabidopsis leaf and root microbiota

  Yang Bai;Daniel B. Müller;Girish Srinivas;Ruben Garrido-Oter;Ruben Garrido-Oter

  1385
  Citations

• Eleven grand challenges in single-cell data science

  David Lähnemann;David Lähnemann;Johannes Köster;Johannes Köster;Ewa Szczurek;Davis J. McCarthy;Davis J. McCarthy

  1301
  Citations

• Defining seasonal marine microbial community dynamics

  Jack A Gilbert;Jack A Gilbert;Jack A Gilbert;Joshua A Steele;J. Gregory Caporaso;Lars Steinbrück

  1165
  Citations

• The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of l-aspartate-derived amino acids and vitamins

  Jörn Kalinowski;Brigitte Bathe;Daniela Bartels;Nicole Bischoff

  1125
  Citations

• Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

  Héctor García Martín;Natalia Ivanova;Victor Kunin;Falk Warnecke

  875
  Citations

• Critical Assessment of Metagenome Interpretation - A benchmark of metagenomics software

  Alexander Sczyrba;Peter Hofmann;Peter Hofmann;Peter Belmann;David Koslicki

  862
  Citations

• GenDB—an open source genome annotation system for prokaryote genomes

  Folker Meyer;Alexander Goesmann;Alice C. McHardy;Daniela Bartels

  830
  Citations

• Microbiota and Host Nutrition across Plant and Animal Kingdoms

  Stéphane Hacquard;Ruben Garrido-Oter;Ruben Garrido-Oter;Antonio González;Stijn Spaepen

  802
  Citations

• Accurate phylogenetic classification of variable-length DNA fragments

  Alice Carolyn McHardy;Héctor García Martín;Aristotelis Tsirigos;Philip Hugenholtz

  599
  Citations

• The amphioxus genome illuminates vertebrate origins and cephalochordate biology

  Linda Z. Holland;Ricard Albalat;Kaoru Azumi;Èlia Benito-Gutiérrez

  590
  Citations

• Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins.

  Peter J. Turnbaugh;Christopher Quince;Jeremiah J. Faith;Alice C. McHardy

  588
  Citations

• Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

  Susanne Schneiker;Vítor A.P. Martins Dos Santos;Daniela Bartels;Thomas Bekel

  529
  Citations

• Complete genome sequence of the myxobacterium Sorangium cellulosum

  Susanne Schneiker;Olena Perlova;Olaf Kaiser;Klaus Gerth

  516
  Citations

• Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium

  Sandrine Brugiroux;Markus Beutler;Carina Pfann;Debora Garzetti

  484
  Citations

• Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome Sequence

  Frank Thieme;Ralf Koebnik;Thomas Bekel;Carolin Berger

  426
  Citations

• Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

  Konstantinos Mavromatis;Natalia Ivanova;Kerrie Barry;Harris Shapiro

  415
  Citations