Xin Gao

Overview

Best Publications

• Deep learning in bioinformatics: Introduction, application, and perspective in the big data era.

  Yu Li;Chao Huang;Lizhong Ding;Zhongxiao Li

  358
  Citations

• DEEPre: sequence-based enzyme EC number prediction by deep learning

  Yu Li;Sheng Wang;Ramzan Umarov;Bingqing Xie

  312
  Citations

• Bioinformatics clouds for big data manipulation.

  Lin Dai;Xin Gao;Yan Guo;Jingfa Xiao

  200
  Citations

• A Rapid, Accurate and Machine-Agnostic Segmentation and Quantification Method for CT-Based COVID-19 Diagnosis

  Longxi Zhou;Zhongxiao Li;Juexiao Zhou;Haoyang Li

  185
  Citations

• Recommendations and Standardization of Biomarker Quantification Using NMR-Based Metabolomics with Particular Focus on Urinary Analysis

  Abdul-Hamid M. Emwas;Raja Roy;Ryan T. McKay;Danielle Ryan

  161
  Citations

• Machine learning and deep learning methods that use omics data for metastasis prediction

  Somayah Albaradei;Somayah Albaradei;Maha A. Thafar;Maha A. Thafar;Asim Alsaedi;Asim Alsaedi;Christophe Marc Van Neste

  156
  Citations

• Recommended strategies for spectral processing and post-processing of 1D 1H-NMR data of biofluids with a particular focus on urine.

  Abdul-Hamid M. Emwas;Edoardo Saccenti;Xin Gao;Ryan T. McKay

  146
  Citations

• Non-negative matrix factorization by maximizing correntropy for cancer clustering

  Jim Jing-Yan Wang;Xiaolei Wang;Xin Gao

  146
  Citations

• Semantic similarity and machine learning with ontologies

  Maxat Kulmanov;Fatima Zohra Smaili;Xin Gao;Robert Hoehndorf

  144
  Citations

• OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction.

  Fatima Zohra Smaili;Xin Gao;Robert Hoehndorf

  142
  Citations

• Multiple graph regularized nonnegative matrix factorization

  Jim Jing-Yan Wang;Halima Bensmail;Xin Gao

  140
  Citations

• Learning from Weak and Noisy Labels for Semantic Segmentation

  Zhiwu Lu;Zhenyong Fu;Tao Xiang;Peng Han

  137
  Citations

• DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques

  Maha A. Thafar;Maha A. Thafar;Rawan S. Olayan;Haitham Ashoor;Somayah Albaradei;Somayah Albaradei

  131
  Citations

• Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations.

  Fatima Zohra Smaili;Xin Gao;Robert Hoehndorf

  124
  Citations

• GCN-MF: Disease-Gene Association Identification By Graph Convolutional Networks and Matrix Factorization

  Peng Han;Peng Yang;Peilin Zhao;Shuo Shang

  123
  Citations

• Using Weighted Sparse Representation Model Combined with Discrete Cosine Transformation to Predict Protein-Protein Interactions from Protein Sequence

  Yu-An Huang;Zhu-Hong You;Xin Gao;Leon Wong

  121
  Citations

• mlDEEPre: Multi-Functional Enzyme Function Prediction With Hierarchical Multi-Label Deep Learning.

  Zhenzhen Zou;Shuye Tian;Xin Gao;Yu Li

  119
  Citations

• Computer-aided drug repurposing for cancer therapy: Approaches and opportunities to challenge anticancer targets

  Carla Mottini;Francesco Napolitano;Zhongxiao Li;Xin Gao

  114
  Citations

• A deep learning framework to predict binding preference of RNA constituents on protein surface

  Jordy Homing Lam;Jordy Homing Lam;Yu Li;Lizhe Zhu;Lizhe Zhu;Ramzan Umarov

  112
  Citations

• DeepSimulator: a deep simulator for Nanopore sequencing.

  Yu Li;Renmin Han;Chongwei Bi;Mo Li

  104
  Citations

• Promoter analysis and prediction in the human genome using sequence-based deep learning models.

  Ramzan Umarov;Hiroyuki Kuwahara;Yu Li;Xin Gao

  102
  Citations

• Notice of Violation of IEEE Publication Principles Bag-of-Features Based Medical Image Retrieval via Multiple Assignment and Visual Words Weighting

  Jingyan Wang;Yongping Li;Ying Zhang;Chao Wang

  92
  Citations

• Multimodal Machine Learning for Automated ICD Coding

  Keyang Xu;Mike Lam;Jingzhi Pang;Xin Gao

  60
  Citations