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Biology and Biochemistry
Switzerland
2023

D-Index & Metrics

Microbiology

D-Index
75
Citations
20871
World Ranking
1495
National Ranking
35

Research.com Recognitions

  • 2023 - Research.com Biology and Biochemistry in Switzerland Leader Award

Overview

Jakob Pernthaler is affiliated with the University of Zurich in Switzerland. Their research primarily focuses on environmental science, with significant contributions in biochemistry, genetics, and molecular biology. Pernthaler's work covers diverse subfields including ecology, molecular biology, oceanography, environmental chemistry, and atmospheric science.

The main topics of their research include microbial community ecology and physiology, marine and coastal ecosystems, protist diversity and phylogeny, gut microbiota and health, genomics and phylogenetic studies, methane hydrates and related phenomena, and marine biology and ecology research.

Jakob Pernthaler has published in several scientific venues, frequently contributing to Environmental Microbiology, Nature Communications, mSphere, mLife, and The ISME Journal.

Some of their recent papers are:

  • Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations (2020, mSphere)
  • A novel Methylomirabilota methanotroph potentially couples methane oxidation to iodate reduction (2022, mLife)
  • The biogeochemical variability of Arctic thermokarst ponds is reflected by stochastic and niche-driven microbial community assembly processes (2020, Environmental Microbiology)
  • Stochasticity causes high β-diversity and functional divergence of bacterial assemblages in closed systems (2023, Ecology)
  • Global freshwater distribution of Telonemia protists (2024, The ISME Journal)

Frequent coauthors collaborating with Pernthaler include:

  • Adrian-Ștefan Andrei
  • Alizée Le Moigne
  • Thomas Posch
  • Cyrill Hofer
  • Michaela M. Salcher

Best Publications

  • Fluorescence In Situ Hybridization and Catalyzed Reporter Deposition for the Identification of Marine Bacteria

    Annelie Pernthaler;Jakob Pernthaler;Rudolf Amann

  • Predation on prokaryotes in the water column and its ecological implications

    Jakob Pernthaler

  • Culturability and In Situ Abundance of Pelagic Bacteria from the North Sea

    Heike Eilers;Jakob Pernthaler;Frank Oliver Glöckner;Rudolf Amann

  • Comparative 16S rRNA Analysis of Lake Bacterioplankton Reveals Globally Distributed Phylogenetic Clusters Including an Abundant Group of Actinobacteria

    Frank Oliver Glöckner;Evgeny Zaichikov;Natalia Belkova;Ludmilla Denissova

  • Contribution of Archaea to Total Prokaryotic Production in the Deep Atlantic Ocean

    G.J. Herndl;T. Reinthaler;E. Teira;H.M. van Aken

  • Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes

    Jakob Pernthaler;Frank-Oliver Glöckner;Wilhelm Schönhuber;Rudolf Amann

  • A global network of coexisting microbes from environmental and whole-genome sequence data

    Samuel Chaffron;Hubert Rehrauer;Jakob Pernthaler;Christian von Mering

  • High bacterial diversity in permanently cold marine sediments.

    Katrin Ravenschlag;Kerstin Sahm;Jakob Pernthaler;Rudolf I. Amann

  • Changes in Bacterial Community Composition and Dynamics and Viral Mortality Rates Associated with Enhanced Flagellate Grazing in a Mesoeutrophic Reservoir

    Karel Šimek;Karel Šimek;Jakob Pernthaler;Markus G. Weinbauer;Karel Hornák

  • Harmful filamentous cyanobacteria favoured by reduced water turnover with lake warming

    Thomas Posch;Oliver Köster;Michaela M. Salcher;Jakob Pernthaler

  • An in situ hybridization protocol for detection and identification of planktonic bacteria

    Frank Oliver Glöckner;Rudolf Amann;Albin Alfreider;Jakob Pernthaler

  • Combining Catalyzed Reporter Deposition-Fluorescence In Situ Hybridization and Microautoradiography To Detect Substrate Utilization by Bacteria and Archaea in the Deep Ocean

    Eva Teira;Thomas Reinthaler;Annelie Pernthaler;Jakob Pernthaler

  • An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization.

    Raju Sekar;Annelie Pernthaler;Jakob Pernthaler;Falk Warnecke

  • Morphological and compositional changes in a planktonic bacterial community in response to enhanced protozoan grazing.

    Klaus Jürgens;Jakob Pernthaler;Sven Schalla;Rudolf Amann

  • Seasonal Community and Population Dynamics of Pelagic Bacteria and Archaea in a High Mountain Lake

    Jakob Pernthaler;Frank-Oliver Glöckner;Stefanie Unterholzner;Albin Alfreider

  • Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization.

    A. Alfreider;J. Pernthaler;R. Amann;B. Sattler

  • Isolation of Novel Pelagic Bacteria from the German Bight and Their Seasonal Contributions to Surface Picoplankton

    Heike Eilers;Jakob Pernthaler;Jörg Peplies;Frank Oliver Glöckner

  • Succession of Pelagic Marine Bacteria during Enrichment: a Close Look at Cultivation-Induced Shifts

    Heike Eilers;Jakob Pernthaler;Rudolf Amann

  • Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages

    Falk Warnecke;Rudolf Amann;Jakob Pernthaler

  • Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean

    Martha Schattenhofer;Bernhard M. Fuchs;Rudolf Amann;Mikhail V. Zubkov

Frequent Co-Authors

Rudolf Amann
Rudolf Amann Max Planck Institute for Marine Microbiology
Karel Šimek
Karel Šimek Institute of Hydrobiology, Biology Centre of the Academy of Sciences of the Czech Republic
Roland Psenner
Roland Psenner University of Innsbruck
Frank Oliver Glöckner
Frank Oliver Glöckner Jacobs University
Eberhard Morgenroth
Eberhard Morgenroth Swiss Federal Institute of Aquatic Science and Technology
Karl Gademann
Karl Gademann University of Zurich
Ruben Sommaruga
Ruben Sommaruga University of Innsbruck
Jarone Pinhassi
Jarone Pinhassi Linnaeus University
Christian von Mering
Christian von Mering University of Zurich

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