Jack Sullivan

Best Publications

• Model Selection in Phylogenetics

  Unknown

  515
  Citations

• Performance-Based Selection of Likelihood Models for Phylogeny Estimation

  Unknown

  488
  Citations

• Are Guinea Pigs Rodents? The Importance of Adequate Models in Molecular Phylogenetics

  Unknown

  376
  Citations

• Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA.

  R E Hickson;C Simon;A Cooper;G S Spicer

  325
  Citations

• Phylogeography and molecular systematics of the Peromyscus aztecus species group (Rodentia: Muridae) inferred using parsimony and likelihood.

  Unknown

  300
  Citations

• Evaluating Hypotheses of Deuterostome Phylogeny and Chordate Evolution with New LSU and SSU Ribosomal DNA Data

  Christopher J. Winchell;Jack Sullivan;Christopher B. Cameron;Billie J. Swalla

  270
  Citations

• Investigating the evolutionary history of the Pacific Northwest mesic forest ecosystem: hypothesis testing within a comparative phylogeographic framework.

  Bryan C. Carstens;Steven J. Brunsfeld;John R. Demboski;Jeffrey M. Good

  268
  Citations

• 28S AND 18S RDNA SEQUENCES SUPPORT THE MONOPHYLY OF LAMPREYS AND HAGFISHES

  Unknown

  266
  Citations

• Evolution of the mitochondrial cytochrome oxidase II gene in collembola.

  Francesco Frati;Chris Simon;Jack Sullivan;David L. Swofford

  253
  Citations

• Ancient hybridization and mitochondrial capture between two species of chipmunks

  Jeffrey M. Good;Sarah Hird;Noah Reid;John R. Demboski

  249
  Citations

• Comparative Phylogeography of Mesoamerican Highland Rodents: Concerted versus Independent Response to Past Climatic Fluctuations.

  Unknown

  241
  Citations

• Should We Use Model-Based Methods for Phylogenetic Inference When We Know That Assumptions About Among-Site Rate Variation and Nucleotide Substitution Pattern Are Violated?

  Unknown

  209
  Citations

• Phylogeography of the tailed frog (Ascaphus truei): implications for the biogeography of the Pacific Northwest.

  Unknown

  207
  Citations

• Combining Data with Different Distributions of Among-Site Rate Variation

  Unknown

  196
  Citations

• Does Choice in Model Selection Affect Maximum Likelihood Analysis

  Unknown

  183
  Citations

• The Effect of Taxon Sampling on Estimating Rate Heterogeneity Parameters of Maximum-Likelihood Models

  J. Sullivan;D. L. Swofford;G. J. P. Naylor

  181
  Citations

• INVESTIGATING THE EVOLUTIONARY HISTORY OF THE PACIFIC NORTHWEST MESIC FOREST ECOSYSTEM: HYPOTHESIS TESTING WITHIN A COMPARATIVE PHYLOGEOGRAPHIC FRAMEWORK

  Unknown

  177
  Citations

• Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents.

  J Sullivan;K E Holsinger;C Simon

  169
  Citations

• The Phylogenetic Handbook: Phylogeny inference based on parsimony and other methods using PAUP

  Unknown

  163
  Citations

• Accounting for coalescent stochasticity in testing phylogeographical hypotheses: modelling Pleistocene population structure in the Idaho giant salamander Dicamptodon aterrimus.

  B. C. Carstens;J. D. Degenhardt;A. L. Stevenson;J. Sullivan

  154
  Citations