Gordon K. Smyth

Research.com Recognitions

• 2023 - Research.com Biology and Biochemistry in Australia Leader Award

Overview

Best Publications

• edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

  Mark D. Robinson;Davis J. McCarthy;Gordon K. Smyth

  37795
  Citations

• limma powers differential expression analyses for RNA-sequencing and microarray studies

  Matthew E. Ritchie;Belinda Phipson;Di Wu;Yifang Hu

  31652
  Citations

• featureCounts: an efficient general-purpose program for assigning sequence reads to genomic features

  Yang Liao;Gordon K. Smyth;Wei Shi

  20491
  Citations

• Bioconductor: open software development for computational biology and bioinformatics

  Robert C Gentleman;Vincent J Carey;Douglas M. Bates;B.M. Bolstad

  14674
  Citations

• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments

  Gordon K Smyth

  13784
  Citations

• limma: Linear Models for Microarray Data

  G. K. Smyth

  6916
  Citations

• Gene ontology analysis for RNA-seq: accounting for selection bias

  Matthew D Young;Matthew J Wakefield;Gordon K Smyth;Alicia Oshlack

  6318
  Citations

• voom: precision weights unlock linear model analysis tools for RNA-seq read counts

  Charity W Law;Charity W Law;Yunshun Chen;Yunshun Chen;Wei Shi;Wei Shi;Gordon K Smyth;Gordon K Smyth

  5674
  Citations

• Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

  Davis J. McCarthy;Yunshun Chen;Gordon K. Smyth

  5011
  Citations

• Orchestrating high-throughput genomic analysis with Bioconductor

  Wolfgang Huber;Vincent J Carey;Robert Gentleman;Simon Anders

  3513
  Citations

• The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

  Yang Liao;Gordon K. Smyth;Wei Shi

  2820
  Citations

• Generation of a functional mammary gland from a single stem cell

  Mark Shackleton;Mark Shackleton;Francois Vaillant;Francois Vaillant;Kaylene J. Simpson;Kaylene J. Simpson;John Stingl

  2548
  Citations

• Normalization of cDNA microarray data.

  Gordon K Smyth;Terry Speed;Terry Speed

  2354
  Citations

• The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads.

  Yang Liao;Yang Liao;Gordon K Smyth;Gordon K Smyth;Wei Shi;Wei Shi

  2204
  Citations

• ELDA: extreme limiting dilution analysis for comparing depleted and enriched populations in stem cell and other assays.

  Yifang Hu;Gordon K. Smyth

  2030
  Citations

• Aberrant luminal progenitors as the candidate target population for basal tumor development in BRCA1 mutation carriers

  Elgene Lim;Elgene Lim;Francois Vaillant;Di Wu;Di Wu;Natasha C Forrest

  1652
  Citations

• Use of within-array replicate spots for assessing differential expression in microarray experiments

  Gordon K. Smyth;Joëlle Michaud;Hamish S. Scott

  1617
  Citations

• Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

  Simon Anders;Davis J McCarthy;Davis J McCarthy;Yunshun Chen;Yunshun Chen;Michal Okoniewski

  1310
  Citations

• Small-sample estimation of negative binomial dispersion, with applications to SAGE data

  Mark D. Robinson;Gordon K. Smyth

  1277
  Citations

• Randomized Quantile Residuals

  Peter K. Dunn;Gordon K. Smyth

  1168
  Citations