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Fredrik Pontén

Fredrik Pontén

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Biology and Biochemistry
Sweden
2023

D-Index & Metrics

Biology and Biochemistry

D-Index
92
Citations
63765
World Ranking
2156
National Ranking
38

Medicine

D-Index
92
Citations
63749
World Ranking
11058
National Ranking
208

Research.com Recognitions

  • 2023 - Research.com Biology and Biochemistry in Sweden Leader Award

Overview

Fredrik Pontén is affiliated with Uppsala University in Sweden. Their research spans several disciplines primarily within medicine and biochemistry, genetics, and molecular biology.

The scientist's main fields of study include:

  • Medicine
  • Biochemistry, Genetics and Molecular Biology

Subfields of particular focus for Pontén are:

  • Molecular Biology
  • Oncology
  • Immunology
  • Cancer Research
  • Pathology and Forensic Medicine

Their research topics cover various aspects of cancer and immunotherapy such as:

  • Cancer Immunotherapy and Biomarkers
  • Single-cell and spatial transcriptomics
  • Immune cells in cancer
  • Genetic factors in colorectal cancer
  • Immunotherapy and Immune Responses
  • Cancer Genomics and Diagnostics
  • Colorectal Cancer Treatments and Studies

Fredrik Pontén has contributed frequently to several publication venues, including:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • SSRN Electronic Journal
  • Annals of Oncology
  • Nature
  • Nature Communications

Among the recent papers involving Pontén are:

  • A single-cell type transcriptomics map of human tissues, 2021, Science Advances
  • An atlas of the protein-coding genes in the human, pig, and mouse brain, 2020, Science
  • Spatiotemporal dissection of the cell cycle with single-cell proteogenomics, 2021, Nature
  • Prognostic genome and transcriptome signatures in colorectal cancers, 2024, Nature
  • Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level, 2022, Nature Communications

Frequent collaborators in their work have included:

  • Cecilia Lindskog
  • Mathias Uhlén
  • Artur Mezheyeuski
  • Bengt Glimelius
  • Tobias Sjöblom

Best Publications

  • Tissue-based map of the human proteome

    Mathias Uhlén;Mathias Uhlén;Linn Fagerberg;Björn M Hallström;Cecilia Lindskog

  • Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

    Linn Fagerberg;Björn M. Hallström;Per Oksvold;Caroline Kampf

  • Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

    Patrik L. Ståhl;Patrik L. Ståhl;Fredrik Salmen;Sanja Vickovic;Anna Lundmark;Anna Lundmark

  • A pathology atlas of the human cancer transcriptome

    Mathias Uhlen;Mathias Uhlen;Cheng Zhang;Sunjae Lee;Evelina Sjöstedt;Evelina Sjöstedt

  • A subcellular map of the human proteome

    Peter J. Thul;Lovisa Åkesson;Mikaela Wiking;Diana Mahdessian

  • Towards a knowledge-based Human Protein Atlas

    Mathias Uhlen;Per Oksvold;Linn Fagerberg;Emma Lundberg

  • International network of cancer genome projects

    Thomas J. Hudson;Thomas J. Hudson;Warwick Anderson;Axel Aretz;Anna D. Barker

  • A Human Protein Atlas for Normal and Cancer Tissues Based on Antibody Proteomics

    Mathias Uhlén;Erik Björling;Charlotta Agaton;Cristina Al-Khalili Szigyarto

  • A single-cell type transcriptomics map of human tissues.

    Max Karlsson;Cheng Zhang;Loren Méar;Wen Zhong

  • The Human Protein Atlas—a tool for pathology

    F. Pontén;K. Jirström;Mathias Uhlén

  • An atlas of the protein-coding genes in the human, pig, and mouse brain

    Evelina Sjöstedt;Evelina Sjöstedt;Wen Zhong;Linn Fagerberg;Max J. Karlsson

  • A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

    Dongxue Wang;Basak Eraslan;Basak Eraslan;Thomas Wieland;Björn M. Hallström

  • A Genecentric Human Protein Atlas for Expression Profiles Based on Antibodies

    Lisa Berglund;Erik Björling;Per Oksvold;Linn Fagerberg

  • The presence of tumor associated macrophages in tumor stroma as a prognostic marker for breast cancer patients

    Catharina Medrek;Fredrik Pontén;Karin Jirström;Karin Leandersson

  • A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

    Mathias Uhlen;Mathias Uhlen;Mathias Uhlen;Max J. Karlsson;Wen Zhong;Abdellah Tebani

  • A high frequency of sequence alterations is due to formalin fixation of archival specimens.

    Cecilia Williams;Fredrik Pontén;Catherine Moberg;Peter Söderkvist

  • Correlations between RNA and protein expression profiles in 23 human cell lines.

    Marcus Gry;Marcus Gry;Rebecca Rimini;Sara Strömberg;Anna Asplund

  • Gene‐specific correlation of RNA and protein levels in human cells and tissues

    Fredrik Edfors;Frida Danielsson;Björn M Hallström;Lukas Käll

  • A cis -acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

    Gerli Rosengren Pielberg;Anna Golovko;Elisabeth Sundström;Ino Curik

  • Antibody-based Proteomics for Human Tissue Profiling

    Mathias Uhlen;Fredrik Ponten

Frequent Co-Authors

Mathias Uhlén
Mathias Uhlén Royal Institute of Technology
Karin Jirström
Karin Jirström Lund University
Joakim Lundeberg
Joakim Lundeberg Royal Institute of Technology
Adil Mardinoglu
Adil Mardinoglu Royal Institute of Technology
Peter Nilsson
Peter Nilsson Royal Institute of Technology
Sophia Hober
Sophia Hober Royal Institute of Technology
Bengt Glimelius
Bengt Glimelius Uppsala University
Jan Pontén
Jan Pontén Uppsala University
Jan Mulder
Jan Mulder Karolinska Institute
Jens Nielsen
Jens Nielsen Chalmers University of Technology

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