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Biology and Biochemistry

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44
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13624
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19202
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7843

Overview

Devin Coleman-Derr is affiliated with the University of California, Berkeley in the United States. Their work spans several fields and subfields of biological sciences, with a focus on the interactions between plants and microbial communities.

The main fields of study for Devin Coleman-Derr include Agricultural and Biological Sciences and Biochemistry, Genetics and Molecular Biology. Relevant subfields they contribute to are Plant Science, Molecular Biology, Ecology, Ecology, Evolution, Behavior and Systematics, and Cell Biology.

The scientist has a research interest centered on several primary topics, including:

  • Plant-Microbe Interactions and Immunity
  • Mycorrhizal Fungi and Plant Interactions
  • Legume Nitrogen Fixing Symbiosis
  • Gut microbiota and health
  • Microbial Community Ecology and Physiology
  • Plant and animal studies
  • Plant Parasitism and Resistance

Devin Coleman-Derr has published extensively, with recent papers appearing in well-known journals. Notable recent publications include:

  • Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities, 2022, Nature Communications
  • Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics, 2020, Nature Communications
  • Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics, 2021, Nature Communications
  • Genome wide association study reveals plant loci controlling heritability of the rhizosphere microbiome, 2021, The ISME Journal
  • Plant immunity suppression via PHR1-RALF-FERONIA shapes the root microbiome to alleviate phosphate starvation, 2022, The EMBO Journal

The frequent publication venues for their work include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • The ISME Journal
  • Frontiers in Plant Science
  • Nature Communications
  • Phytobiomes Journal

Devin Coleman-Derr has collaborated frequently with several researchers, including:

  • Daniel Caddell
  • Elizabeth Purdom
  • John P. Vogel
  • Robert B. Hutmacher
  • Jeffery Dahlberg

Best Publications

  • The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

    Assaf Zemach;M. Yvonne Kim;Ping Hung Hsieh;Devin Coleman-Derr

  • OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species

    Yi Wang;Devin Coleman-Derr;Guoping Chen;Yong Qiang Gu

  • Plant Compartment and Biogeography Affect Microbiome Composition in Cultivated and Native Agave Species

    Devin Coleman‐Derr;Devin Coleman‐Derr;Damaris Desgarennes;Citlali Fonseca‐Garcia;Stephen Gross

  • Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

    Daniel Zilberman;Devin Coleman-Derr;Tracy Ballinger;Tracy Ballinger;Steven Henikoff;Steven Henikoff

  • Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria

    Ling Xu;Dan Naylor;Dan Naylor;Zhaobin Dong;Zhaobin Dong;Tuesday Simmons;Tuesday Simmons

  • Drought Stress and Root-Associated Bacterial Communities.

    Dan Naylor;Devin Coleman-Derr;Devin Coleman-Derr

  • Drought and host selection influence bacterial community dynamics in the grass root microbiome.

    Dan Naylor;Stephanie DeGraaf;Elizabeth Purdom;Devin Coleman-Derr

  • Deposition of histone variant H2A.Z within gene bodies regulates responsive genes

    Devin Coleman-Derr;Daniel Zilberman

  • Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative.

    Maggie R. Wagner;Derek S. Lundberg;Devin Coleman-Derr;Susannah G. Tringe

  • Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics

    Cheng Gao;Liliam Montoya;Ling Xu;Ling Xu;Mary Madera

  • High-resolution phylogenetic microbial community profiling

    Esther Singer;Brian Bushnell;Devin Coleman-Derr;Devin Coleman-Derr;Brett Bowman

  • Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

    Eduard D. Akhunov;Alina R. Akhunova;Olin D. Anderson;James A. Anderson

  • Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae

    M. C. Luo;K. R. Deal;E. D. Akhunov;E. D. Akhunov;A. R. Akhunova;A. R. Akhunova

  • Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics.

    Ling Xu;Zhaobin Dong;Dawn Chiniquy;Grady Pierroz

  • Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance

    Devin Coleman-Derr;Susannah G. Tringe

  • The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity

    Citlali Fonseca-García;Devin Coleman-Derr;Devin Coleman-Derr;Devin Coleman-Derr;Etzel Garrido;Axel Visel;Axel Visel;Axel Visel

  • Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses.

    Nelle Varoquaux;Benjamin Cole;Cheng Gao;Grady Pierroz;Grady Pierroz

  • Rapid Genome Evolution Revealed by Comparative Sequence Analysis of Orthologous Regions from Four Triticeae Genomes

    Yong Qiang Gu;Devin Coleman-Derr;Xiuying Kong;Olin D. Anderson

  • EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon.

    John P. Vogel;Yong Qiang Gu;Paul Twigg;Gerard R. Lazo

  • Genome wide association study reveals plant loci controlling heritability of the rhizosphere microbiome

    Siwen Deng;Daniel F. Caddell;Gen Xu;Lindsay Dahlen;Lindsay Dahlen

Frequent Co-Authors

Olin D. Anderson
Olin D. Anderson United States Department of Agriculture
Axel Visel
Axel Visel Lawrence Berkeley National Laboratory
Gerard R. Lazo
Gerard R. Lazo Agricultural Research Service
John P. Vogel
John P. Vogel University of California, Berkeley
Peggy G. Lemaux
Peggy G. Lemaux University of California, Berkeley
Susannah G. Tringe
Susannah G. Tringe Joint Genome Institute
John W. Taylor
John W. Taylor University of California, Berkeley
Frank M. You
Frank M. You Agriculture and Agriculture-Food Canada
Robert B. Hutmacher
Robert B. Hutmacher University of California, Davis
Henrik Vibe Scheller
Henrik Vibe Scheller Lawrence Berkeley National Laboratory

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