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Genetics

D-Index
67
Citations
29707
World Ranking
2492
National Ranking
1117

Overview

David W. Ussery is affiliated with the University of Arkansas for Medical Sciences in the United States. Their research primarily spans fields related to biochemistry, genetics, molecular biology, and medicine. Within these broad areas, they have concentrated on several specialized subfields including molecular biology, infectious diseases, epidemiology, ecology, and cancer research.

The scientist's work addresses key topics such as genomics and phylogenetic studies, bacteriophages and microbial interactions, SARS-CoV-2 and COVID-19 research, cancer-related molecular mechanisms, viral gastroenteritis research and epidemiology, cervical cancer and HPV research, as well as RNA modifications and cancer.

Recent publications by David W. Ussery reflect a broad range of interests in molecular and biomedical research. Notable papers include:

  • Machine Learning Methods in Drug Discovery, 2020, published in Molecules
  • Decoding the epitranscriptional landscape from native RNA sequences, 2020, published in Nucleic Acids Research
  • Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups, 2021, published in Communications Biology
  • A novel Cas9-targeted long-read assay for simultaneous detection of IDH1/2 mutations and clinically relevant MGMT methylation in fresh biopsies of diffuse glioma, 2020, published in Acta Neuropathologica Communications
  • The first three waves of the Covid-19 pandemic hint at a limited genetic repertoire for SARS-CoV-2, 2022, published in FEMS Microbiology Reviews

David W. Ussery has collaborated frequently with a group of recurring coauthors, including Intawat Nookaew, Visanu Wanchai, Trudy M. Wassenaar, Piroon Jenjaroenpun, and Thidathip Wongsurawat. These collaborations suggest a multidisciplinary approach linking molecular techniques with infectious disease and epidemiological studies.

The scientist has published regularly in several academic venues, with multiple contributions to:

  • Microbiology Resource Announcements
  • Open Access Government
  • Nucleic Acids Research
  • Journal of Applied Microbiology
  • Journal of Clinical Oncology

David W. Ussery's research trajectory reflects an integration of computational biology techniques, microbial genomics, and disease-related molecular studies. Their work engages with contemporary biomedical challenges, particularly through the lens of genomic and transcriptomic analysis, drug discovery methodologies, and infectious disease monitoring. The publication record and collaborative network highlight sustained contributions to these interconnected areas of scientific inquiry.

Best Publications

  • RNAmmer: consistent and rapid annotation of ribosomal RNA genes

    Karin Lagesen;Peter Fischer Hallin;Einar Andreas Rødland;Hans Henrik Stærfeldt

  • Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

    Mette V. Larsen;Salvatore Cosentino;Simon Rasmussen;Carsten Friis

  • The genome sequence of Schizosaccharomyces pombe

    V. Wood;R. Gwilliam;M.A. Rajandream;M. Lyne

  • Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

    Herman J. Pel;Johannes H. De Winde;Johannes H. De Winde;David B. Archer;Paul S. Dyer

  • DNA Structure and Function

    Richard R. Sinden;Christopher E. Pearson;Vladimir N. Potaman;David W. Ussery

  • The minimum information about a genome sequence (MIGS) specification.

    Dawn Field;George Garrity;Tanya Gray;Norman Morrison

  • Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

    H Bjørn Nielsen;Mathieu Almeida;Agnieszka Sierakowska Juncker;Simon Rasmussen

  • Insights from 20 years of bacterial genome sequencing

    Miriam L. Land;Loren Hauser;Se-Ran Jun;Intawat Nookaew

  • Comparison of 61 Sequenced Escherichia Coli Genomes

    Oksana Lukjancenko;Trudy M. Wassenaar;David W. Ussery

  • The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

    Carsten Kröger;Shane C. Dillon;Andrew D. S. Cameron;Kai Papenfort

  • Benchmarking of Methods for Genomic Taxonomy

    Mette Voldby Larsen;Salvatore Cosentino;Oksana Lukjancenko;Dhany Saputra

  • The chromatin-associated protein H-NS alters DNA topology in vitro.

    A. E. Tupper;T. A. Owen-Hughes;D. W. Ussery;D. S. Santos

  • The Complete Genome Sequence and Analysis of the Epsilonproteobacterium Arcobacter butzleri

    William G. Miller;Craig T. Parker;Marc Rubenfield;George L. Mendz

  • A DNA structural atlas for Escherichia coli.

    Anders Gorm Pedersen;Lars Juhl Jensen;Søren Brunak;Hans-Henrik Stærfeldt

  • On the total number of genes and their length distribution in complete microbial genomes

    Marie Skovgaard;L.J. Jensen;Søren Brunak;David Ussery

  • Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes

    Rolf S Kaas;Carsten Friis;David W Ussery;Frank M Aarestrup

  • Ten years of bacterial genome sequencing: comparative-genomics-based discoveries

    Tim T. Binnewies;Yair Motro;Peter F. Hallin;Ole Lund

  • The Salmonella enterica Pan-genome

    Annika Jacobsen;Rene S. Hendriksen;Frank M. Aaresturp;David W. Ussery;David W. Ussery

  • The Genomic Standards Consortium

    Dawn Field;Linda A Amaral-Zettler;Guy Cochrane;James R. Cole

  • Decoding the epitranscriptional landscape from native RNA sequences.

    Piroon Jenjaroenpun;Thidathip Wongsurawat;Taylor D Wadley;Trudy M Wassenaar

Frequent Co-Authors

Intawat Nookaew
Intawat Nookaew University of Arkansas for Medical Sciences
Trudy M. Wassenaar
Trudy M. Wassenaar University of Arkansas for Medical Sciences
Thomas Sicheritz-Pontén
Thomas Sicheritz-Pontén University of Copenhagen
Søren Brunak
Søren Brunak University of Copenhagen
Ole Lund
Ole Lund Danish National Genome Center
Richard R. Sinden
Richard R. Sinden South Dakota School of Mines and Technology
Stephen L. W. On
Stephen L. W. On Lincoln University
Eystein Skjerve
Eystein Skjerve Norwegian University of Life Sciences
George M. Garrity
George M. Garrity Michigan State University
Fabiano L. Thompson
Fabiano L. Thompson Federal University of Rio de Janeiro

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