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Biology and Biochemistry

D-Index
94
Citations
57085
World Ranking
1955
National Ranking
22

Overview

Ole Lund is affiliated with the Danish National Genome Center in Denmark and focuses research efforts in the fields of biochemistry, genetics, and molecular biology, with a significant intersection in agricultural and biological sciences.

Their primary research interests span several subfields, including molecular biology, ecology, plant science, genetics, and clinical biochemistry. These areas reflect a multidisciplinary approach to understanding biological systems at both molecular and ecological levels.

Key topics covered in their work include genomics and phylogenetic studies, bacteriophages and microbial interactions, bacterial identification and susceptibility testing, probiotics and fermented foods, microbial community ecology and physiology, antibiotic resistance in bacteria, and genetic associations and epidemiology.

Ole Lund's publication record includes articles in various scientific venues. Frequent publication platforms include bioRxiv (Cold Spring Harbor Laboratory) with five papers, mSystems with three papers, Scientific Reports with three papers, Pediatric Critical Care Medicine with two papers, and the Journal of Antimicrobial Chemotherapy. This distribution indicates engagement with both preprint and peer-reviewed journals across microbiology and related disciplines.

The following are examples of recent publications:

  • "ResFinder 4.0 for predictions of phenotypes from genotypes," 2020, Journal of Antimicrobial Chemotherapy
  • In Silico Genotyping of Escherichia coli Isolates for Extraintestinal Virulence Genes by Use of Whole-Genome Sequencing Data, 2020, Journal of Clinical Microbiology
  • "CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data," 2020, Genome Biology
  • "Prediction of Acquired Antimicrobial Resistance for Multiple Bacterial Species Using Neural Networks," 2020, mSystems
  • "Diversity, plant growth-promoting traits, and biocontrol potential of fungal endophytes of Sorghum bicolor," 2020, Plant Pathology

Collaboration is a notable aspect of their research activity, with frequent coauthors including Frank M. Aarestrup and Philip T. L. C. Clausen, each having coauthored 11 publications alongside Ole Lund. Other regular collaborators are Derya Aytan-Aktug and Judit Szarvas, each with six coauthored works, and Sébastien Matamoros with four joint papers.

Best Publications

  • Identification of acquired antimicrobial resistance genes

    Ea Zankari;Henrik Hasman;Salvatore Cosentino;Martin Vestergaard

  • In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

    Alessandra Carattoli;Ea Zankari;Aurora García-Fernández;Mette Voldby Larsen

  • ResFinder 4.0 for predictions of phenotypes from genotypes.

    Valeria Bortolaia;Rolf S Kaas;Etienne Ruppe;Marilyn C Roberts

  • Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

    Mette V. Larsen;Salvatore Cosentino;Simon Rasmussen;Carsten Friis

  • Improved method for predicting linear B-cell epitopes.

    Jens Erik Pontoppidan Larsen;Ole Lund;Morten Nielsen

  • Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

    Katrine Grimstrup Joensen;Flemming Scheutz;Ole Lund;Henrik Hasman

  • Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

    Morten Nielsen;Claus Lundegaard;Peder Worning;Sanne Lise Lauemøller

  • Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

    H Bjørn Nielsen;Mathieu Almeida;Agnieszka Sierakowska Juncker;Simon Rasmussen

  • Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

    Rene S. Hendriksen;Patrick Munk;Patrick Murigu Kamau Njage;Bram van Bunnik

  • Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

    Mette V Larsen;Claus Lundegaard;Kasper Lamberth;Soren Buus

  • NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11

    Claus Lundegaard;Kasper Lamberth;Mikkel Harndahl;Søren Buus

  • Solving the problem of comparing whole bacterial genomes across different sequencing platforms.

    Rolf Sommer Kaas;Pimlapas Leekitcharoenphon;Frank Møller Aarestrup;Ole Lund

  • An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia

    Morten Rasmussen;Xiaosen Guo;Yong Wang;Kirk E. Lohmueller

  • NetMHCpan, a method for MHC class I binding prediction beyond humans

    Ilka Hoof;Bjoern Peters;John Sidney;Lasse Eggers Pedersen

  • Insights from 20 years of bacterial genome sequencing

    Miriam L. Land;Loren Hauser;Se-Ran Jun;Intawat Nookaew

  • NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence.

    Morten A. Nielsen;Claus Lundegaard;Thomas H. Blicher;Kasper Lamberth

  • Prediction of residues in discontinuous B-cell epitopes using protein 3D structures

    Pernille Haste Andersen;Morten Nielsen;Ole Lund

  • Peptide binding predictions for HLA DR, DP and DQ molecules

    Peng Wang;John Sidney;Yohan Kim;Alessandro Sette

  • Computational Immunology Meets Bioinformatics: The Use of Prediction Tools for Molecular Binding in the Simulation of the Immune System

    Nicolas Rapin;Ole Lund;Massimo Bernaschi;Filippo Castiglione

  • Reliable B cell epitope predictions: impacts of method development and improved benchmarking.

    Jens Vindahl Kringelum;Claus Lundegaard;Ole Lund;Morten Nielsen

Frequent Co-Authors

Morten Nielsen
Morten Nielsen Technical University of Denmark
Frank Møller Aarestrup
Frank Møller Aarestrup Technical University of Denmark
Søren Brunak
Søren Brunak University of Copenhagen
Søren Buus
Søren Buus University of Copenhagen
Thomas Sicheritz-Pontén
Thomas Sicheritz-Pontén University of Copenhagen
Alessandro Sette
Alessandro Sette La Jolla Institute For Allergy & Immunology
Henrik Hasman
Henrik Hasman Statens Serum Institut
Bjoern Peters
Bjoern Peters La Jolla Institute For Allergy & Immunology
David W. Ussery
David W. Ussery University of Arkansas for Medical Sciences
Simon Rasmussen
Simon Rasmussen University of Copenhagen

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