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D-Index & Metrics

Biology and Biochemistry

D-Index
58
Citations
12041
World Ranking
13176
National Ranking
5618

Overview

Daniel R. Noguera is affiliated with the University of Wisconsin-Madison in the United States. Their research spans multiple fields within the life and environmental sciences. The main fields of study associated with their work include Biochemistry, Genetics and Molecular Biology, Environmental Science, and Engineering. Within these broad areas, their focus extends to subfields such as Molecular Biology, Biomedical Engineering, Pollution, Ecology, and Biotechnology.

The scientist's research topics cover various domains, particularly emphasizing biofuel production and bioconversion, microbial metabolic engineering and bioproduction, and genomics and phylogenetic studies. Their work also addresses wastewater treatment and nitrogen removal, microbial community ecology and physiology, biochemistry and biochemical processes, and lignin and wood chemistry.

Frequent publication venues for their work include Microbiology Resource Announcements, mSystems, bioRxiv (Cold Spring Harbor Laboratory), Applied and Environmental Microbiology, and Green Chemistry. These venues reflect a strong presence in microbiology and environmental science literature.

Daniel R. Noguera has collaborated regularly with several coauthors, including Timothy J. Donohue, Kevin S. Myers, Katherine D. McMahon, Nathaniel W. Fortney, and Abel T. Ingle. These collaborations span a range of publications and research projects.

Recent notable papers include:

  • Environmental impacts of phosphorus recovery through struvite precipitation in wastewater treatment, 2020, Journal of Cleaner Production
  • Autotrophic and mixotrophic metabolism of an anammox bacterium revealed by in vivo 13C and 2H metabolic network mapping, 2020, The ISME Journal
  • Thousands of small, novel genes predicted in global phage genomes, 2022, Cell Reports
  • Integrating lignin depolymerization with microbial funneling processes using agronomically relevant feedstocks, 2022, Green Chemistry
  • Redundancy in Aromatic O-Demethylation and Ring-Opening Reactions in Novosphingobium aromaticivorans and Their Impact in the Metabolism of Plant-Derived Phenolics, 2021, Applied and Environmental Microbiology

Best Publications

  • DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences

    Erik S. Wright;L. Safak Yilmaz;Daniel R. Noguera

  • Metabolic network analysis reveals microbial community interactions in anammox granules.

    Christopher E. Lawson;Sha Wu;Ananda S. Bhattacharjee;Joshua J. Hamilton

  • Common principles and best practices for engineering microbiomes

    Christopher E. Lawson;William R. Harcombe;Roland Hatzenpichler;Stephen R. Lindemann

  • Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization.

    L Raskin;L K Poulsen;D R Noguera;B E Rittmann

  • Evaluating the effect of dissolved oxygen on ammonia-oxidizing bacterial communities in activated sludge.

    Hee Deung Park;Daniel R. Noguera

  • Ammonia- and Nitrite-Oxidizing Bacterial Communities in a Pilot-Scale Chloraminated Drinking Water Distribution System

    John M. Regan;Gregory W. Harrington;Daniel R. Noguera

  • Involvement of Rhodocyclus-Related Organisms in Phosphorus Removal in Full-Scale Wastewater Treatment Plants

    Julie L. Zilles;Jordan Peccia;Myeong Woon Kim;Chun Hsiung Hung

  • Denitrification capabilities of two biological phosphorus removal sludges dominated by different ‘Candidatus Accumulibacter’ clades

    Jason J. Flowers;Shaomei He;Safak Yilmaz;Daniel R. Noguera

  • Ammonia-oxidizing microbial communities in reactors with efficient nitrification at low-dissolved oxygen.

    Colin M. Fitzgerald;Pamela Camejo;J. Zachary Oshlag;Daniel R. Noguera

  • Nitrite concentration influences the population structure of Nitrospira‐like bacteria

    Frank Maixner;Daniel R. Noguera;Bettina Anneser;Kilian Stoecker

  • Adsorption of Cu2+ and Zn2+ by extracellular polymeric substances (EPS) in different sludges: Effect of EPS fractional polarity on binding mechanism.

    Liangliang Wei;Yang Li;Daniel R. Noguera;Ningbo Zhao

  • Soluble microbial products (SMP) in anaerobic chemostats

    Daniel R. Noguera;Nobuo Araki;Bruce E. Rittmann

  • Transformation of 2,4,6-trinitrotoluene by purified xenobiotic reductase B from Pseudomonas fluorescens I-C.

    Jeong W. Pak;Kyle L. Knoke;Daniel R. Noguera;Brian G. Fox

  • mathFISH, a web tool that uses thermodynamics-based mathematical models for in silico evaluation of oligonucleotide probes for fluorescence in situ hybridization.

    L. Safak Yilmaz;Shreyas Parnerkar;Daniel R. Noguera

  • Diversity of nitrifying bacteria in full-scale chloraminated distribution systems

    John M Regan;Gregory W Harrington;Hélène Baribeau;Ricardo De Leon

  • Genome-Enabled Insights into the Ecophysiology of the Comammox Bacterium “Candidatus Nitrospira nitrosa”

    Pamela Y. Camejo;Jorge Santo Domingo;Katherine D. McMahon;Daniel R. Noguera

  • Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH.

    Tatsuhiko Hoshino;L. Safak Yilmaz;Daniel R. Noguera;Holger Daims

  • Simulation of multispecies biofilm development in three dimensions

    Daniel R. Noguera;Gonzalo Pizarro;David A. Stahl;Bruce E. Rittmann

  • Quantitative cellular automaton model for biofilms

    Gonzalo Pizarro;David Griffeath;Daniel R. Noguera

  • Mechanistic Approach to the Problem of Hybridization Efficiency in Fluorescent In Situ Hybridization

    L. Safak Yilmaz;Daniel R. Noguera

Frequent Co-Authors

Timothy J. Donohue
Timothy J. Donohue University of Wisconsin–Madison
Katherine D. McMahon
Katherine D. McMahon University of Wisconsin–Madison
John Ralph
John Ralph Great Lakes Bioenergy Research Center
Hee-Deung Park
Hee-Deung Park Korea University
Bruce E. Rittmann
Bruce E. Rittmann Arizona State University
Jorge W. Santo Domingo
Jorge W. Santo Domingo Environmental Protection Agency
Mike S. M. Jetten
Mike S. M. Jetten Radboud University
Paul D. Adams
Paul D. Adams Lawrence Berkeley National Laboratory
Marc A. Anderson
Marc A. Anderson University of Wisconsin–Madison
Jordan Peccia
Jordan Peccia Yale University

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